>PF11038 (278 residues) AGGSLTQSDIRGGGSAVPTLLVVALPPPFRWASDPQLGTHLSFVPTSTAQPSGFGGLWGA MLRNATWERNATNPSTVLELAVPVHRGYFIAADETIVIRCDAAAVFGGCKGVLLGFFTIR SSTLPAVASALSAITGVVAGAAAVAVVVTGGLGSILGMQALGVFARMSCASVQERASTAA LPYFLSVFAALDPLWMVVGNALLAAVFGCVHYGVTAAFQRWRGVDAASAWAAMRFPSLTY VVAHAMHLGIFFGSVLALAMPGARVQHRVIGVVGVLYG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | AGGSLTQSDIRGGGSAVPTLLVVALPPPFRWASDPQLGTHLSFVPTSTAQPSGFGGLWGAMLRNATWERNATNPSTVLELAVPVHRGYFIAADETIVIRCDAAAVFGGCKGVLLGFFTIRSSTLPAVASALSAITGVVAGAAAVAVVVTGGLGSILGMQALGVFARMSCASVQERASTAALPYFLSVFAALDPLWMVVGNALLAAVFGCVHYGVTAAFQRWRGVDAASAWAAMRFPSLTYVVAHAMHLGIFFGSVLALAMPGARVQHRVIGVVGVLYG | |||||||||||||||||||
1 | 5cqcA | 0.12 | 0.12 | 4.16 | 0.70 | SPARKS-K | IYPPETSWEVNKGMNS--SRLSLFFDSAFYLDVSVLLTGAYGFQSKKNDQQRPDSDYHVDAKSDAGWVNKATQPATLPFVEMPTDITKGVQHQVLLTISYDPK------SKQLTPTVYDSIESLSSYFKGKYRTTCDEILTQSIEKAIKGNCGSYTFRTIKEVISSSSYLTSQHVQDIESCIKYRNLGVQLSEFIVALEDYGKLRSQLTAVELLIGILNDIKGKNE---ISESQYDKLVKEVDCLMDSSLGKLVQFHLKNLGAESLQKLVLPCVKFD- | |||||||||||||
2 | 4hkrA | 0.20 | 0.09 | 2.76 | 0.66 | FFAS-3D | ----------------------------------------------------------------------------------------------------------------------------RAKLKASSKTSALLSGFAMVAMVICTTLLVAVHMLALMISTCILPNPHERLHWYIETAWAFS---------TLLGLILFLLEIAIL------CWVKFYDLSRRAAWSA------TVVLIPVMIIFMAFAIHFYRSL----VSHK---------- | |||||||||||||
3 | 3wajA | 0.16 | 0.05 | 1.56 | 0.36 | HHpred | ------------------------------PVKIAPSGYVKIFERVKGAVVTGKVSANVVSVRTFEYWQTVEVKNGTYTVVLPYSTPYHIKAGNVKEITIYESQVQNGEIIQL--------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 2vpjA | 0.15 | 0.14 | 4.71 | 0.44 | MUSTER | ANEVL----V-GGSQQSPIDVVEKYPKTQEWSFLPSITRKRRY--VASVSLHDIGGYDGRSRLSSVECLDYTADEVWYSVAMNVRRGLAGATGDMIYVSG----FDGSRRHTSMERYDPNIDQLGDMQTAREGAGLVVASG---VIYCLGGYDGLNILNSVEKY---DPHTGHTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA-RTDSWTTVTSMTTPRCYVGA-LRGRLYAIA--YDGNSLLSSIECYDPIITSMGTQRCDAGVCVLR | |||||||||||||
5 | 5ezmA | 0.08 | 0.04 | 1.59 | 0.83 | CNFpred | ---------------------------------------------------------------------------------------------------------------TIRYNALKYFEKPPFHMWVTVVGYELF-GLGEWQARLAVALSGLLGIGVSMMAARRW---GARAAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDAVAARRGWMVACWAAMGVAILTKGLVGIALPGLVLVVYTL------------------ | |||||||||||||
6 | 2okxA | 0.14 | 0.13 | 4.40 | 0.36 | HHsearch-2 | FGPAFDDGGWAQARSIAPWTSLVPRDIPASIQSKAPYCGYVATILTLETVVDGLGVPLATIEAFASWVKPFEDGSGFIGFELEAP------AGTIIDAYGVEYMREGGCREGGFRYLFLTVRGNSA-PVKLHEIYIRQSTYPEQGSFRCSDA-LLNATWEISRHTTRLCMEDPSY---EQVFWV--------------GDSRNEALVNYYVFGETEIVADETPPNWTFFFAARIWPAVKHTLTHYLEHI---DDSGLLNMAGWNLLDWAEGIVAYLCG | |||||||||||||
7 | 1yj8A | 0.08 | 0.08 | 3.07 | 0.62 | Neff-PPAS | --KYLKGVPLPHNIVAHSDLLIFIVPCQLASIKEIKIASHAKAISLTK----GFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLYFKINCVNETIEVEICGALKNIITLACGFCDGLNLAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMFPLFTVLHKISFENEDPSSLLKTFMNNKINQ------------ | |||||||||||||
8 | 3bwnB3 | 0.16 | 0.03 | 1.07 | 0.46 | HHsearch | ----------RS----QPVSVVAAVSGMYKWEGDAWGFDYIEL--VTSPNPDGT-------IRET-VVNR-PDDDEA-KVI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3jadA | 0.11 | 0.10 | 3.47 | 0.74 | SP3 | PDDSLDLDPSMLDSIWKPDNFHEVTTDNKLLRISKN-GNVLYSIRITLMDLKNFPESFG---YTMNDLIFEWDEKGAVQVADGLTLPQFILKEEKDLRYCTKH-YNTGKFTCIEARFHLERQMIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSR----ASLPKVSYV---KAIDIWM----AVCLLFVFSALLEYAAVNFIARKLFISR--AKRIDTVSRVAFP-LVFLIFNIFYWITYKLV------------------------ | |||||||||||||
10 | 1qtra | 0.11 | 0.09 | 3.39 | 0.96 | PROSPECTOR2 | LRGLYP-----------------PLAAYDSGWLDTGDGHRIYWELSGNPNGKGGPGGGISPHHRQLFDPERSRPH-------ASLDNNTTGVEQWLVFGGSLAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQDGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESDDFALAFARIENHYFTHLGFLESDDQLLRNVPLIRHIPACQVQNAWDLAPGILHQLMIATDR--------------FAGK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |