Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | AGWTGRDTVAMEKHIRELEALGVKRPATTPVFYRVAADRLDPSPAIQVSGGQSSGEAEFVLVRNGGDTFVGIASDHTDREVETYGITVSKQMCGKPCANTLWRLDDVTGHWDRLVLRAYATIDGERVLYQEGSVTAMRTPDDLLAQFARDGGRFEDGTAMLCGTLAAIGGIRPAERFEVELEDPVLGRTIRHAY |
1 | 4dbfA2 | 0.16 | 0.14 | 4.64 | 3.07 | SPARKS-K | | VVAIGRNYAD----------------SLPPTLFLKPPAVTGPESPIRIPATKVEFEGELAVVIGKPVLGFTIINDVSSRDLQFADGQWARAKTFGPIGPWIETINSID--LDNLPIKARLTHDGETQLKQDSNSNQMMKMGEIIEFITASM-TLLPGDVIATGSPAGTEAMVDGDYIEIEIPGIG---KLGNPV |
2 | 1gttA1 | 0.16 | 0.15 | 4.94 | 2.18 | FFAS-3D | | ---VALNH---RSQLDAWQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQEKVLSGATVALIVGKTATGYALANDVSLPEESYRPAIKAKCRDGFCPIGETVALS------NVDNLTIYTEINGRPA--DHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRVRVLAE--GFPPLENP-- |
3 | 1gttA | 0.17 | 0.15 | 5.07 | 3.74 | HHpred | | LFALGLNYAD---H-----------P-EEPLVFLKAPNLTGDNQTSVRPIEYMHYEAELVVVIGKARAGYTVCNDYAIRDYLENYRPNLRVKGLTPMLSTIVPKEAIP-DPHNLTLRTFV--NG--ELRQQGTTADLFSVPFLIAYLSEFM-TLNPGDMIATGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSE |
4 | 3bqbX | 0.16 | 0.15 | 5.16 | 1.84 | MUSTER | | PPESGISYEMRERYSEENVAKILGKTAVRPEIFFKATRCVGHGEAIAVRSEWTLPEPELAVVLDSNGLGYTIMDDVSARDLEAENPYLPQSKIYAAFGPVIVTSDEI-KNPYSLDITLKIVREGRVFFEGSVNTNKMRKIEEQIQYLIR-DNPIPDGTILTTGTPGRDKGLKDEDIVEITISNIGT-TPVKKRR |
5 | 4dbfA | 0.16 | 0.14 | 4.64 | 2.59 | CNFpred | | VVAIGRNYAD----------------SLPPTLFLKPPAVTGPESPIRIPSTKVEFEGELAVVIGKVVLGFTIINDVSSRDLQFADGQWARAKGFGPIGPWIETDINS--DLDNLPIKARLTHDGETQLKQDSNSNQMMKMGEIIEFITAS-MTLLPGDVIATGSPAGTEAMVDGDYIEIEIPG---IGKLGNPV |
6 | 1gttA | 0.17 | 0.15 | 5.07 | 1.79 | HHsearch-2 | | LFALGLNYAD---H-----------P-EEPLVFLKAPNLTGDNQTSVRPIEYMHYEAELVVVIGKARAGYTVCNDYAIRDYLENYRPNLRVKGLTPMLSTIVPKEAIP-DPHNLTLRTFV--NG--ELRQQGTTADLFSVPFLIAYLSEFM-TLNPGDMIATGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSE |
7 | 4dbfA2 | 0.17 | 0.15 | 5.07 | 2.77 | Neff-PPAS | | --AIGRNYA---DSLP------------PTLFLKPPTAVTGPESPIRIPATKVEFEGELAVVIGKPCLGFTIINDVSSRDLQFADGQWARAKGIGPIGPWIET-DINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEIIEFITASMTLLPGDVIATGSPAGTEAMVDGDYIEIEIP--GIGKLGNPVV |
8 | 1gttA | 0.17 | 0.15 | 5.06 | 2.81 | HHsearch | | LFALGLNYAD---H-----------P-EEPLVFLKAPNLTGDNQTSVRPIEYMHYEAELVVVIGKARAGYTVCNDYAIRDYLENYRPNLRVKGLTPMLSTIVPKEAIP-DPHNLTLRTFV--NG--ELRQQGTTADLFSVPFLIAYLSEFM-TLNPGDMIATGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVS- |
9 | 4dbfA2 | 0.15 | 0.14 | 4.66 | 2.09 | PROSPECTOR2 | | PSAIGRNYAD----------------SLPPTLFLKPPTATGPESPIRIPATKVEFEGELAVVIGKPCLGFTIINDVSSRDLQFADGQWARAKTFGPIGPWIETDIN-SIDLDNLPIKARLTHDGETQLKQDSNSNQMMKMGEIIEFITASM-TLLPGDVIATGSPAGTEAMVDGDYIEIEIPGIGKLGNPVVDA |
10 | 1gttA | 0.18 | 0.15 | 4.88 | 2.57 | SAM | | --ALGLNYAD---H--------------EPLVFLKAPNLTGDNQTSVRPIEYMHYEAELVVVIGKARAGYTVCNDYAIRDYLENYRPNLRVKGLTPMLSTIVPKEAIP-DPHNLTLRTFV--NG--ELRQQGTTADLFSVPFLIAYLSEFM-TLNPGDMIATGTPKGLSDVVPGDEVVVEVEGVGRLVN----- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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