Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60
| | | |
| Seq | RKLIGTVAILVFVCVYALVAMALAQGRITEAPKLVQTIAYVVLGLAWVLPLLPLIRWMER |
1 | 5nl2A3 | 0.05 | 0.05 | 2.35 | 1.33 | SPARKS-K | | FTNLVSIIFMIAVTFAIVLGVIIYRISTAATAVIINLVVIILLDEVYGCIARWLTKIEVP |
2 | 1p49A1 | 0.16 | 0.15 | 4.97 | 1.43 | MUSTER | | TGFKRLVFLPLQIVGVTLLTLAALNCLLLHVPLGVFFSLLFLAALILTLFLGFLH----- |
3 | 5wudA1 | 0.15 | 0.15 | 5.05 | 1.02 | Neff-PPAS | | KKGMDLLGVLVLGFSTALGGGIISNLLLGKTPTNLIYYPYPITAFLASLATFVFYRIFTN |
4 | 3dl8C | 0.14 | 0.08 | 2.83 | 1.32 | SPARKS-K | | KATISVIIFSLAIGVYLWILDLTFTKIISFILSLR------------------------- |
5 | 4hkrA | 0.14 | 0.13 | 4.55 | 0.55 | FFAS-3D | | --LIAFAICTTLLVAVHMLALMISTCILPNPHERTAWAFSTLLGLILFLLEIAILCWVK- |
6 | 3ukmA | 0.05 | 0.03 | 1.63 | 0.21 | HHpred | | NSATMFGFLVLGYLLYLVFGAVVFSS-VELPYDFTSALFFASTVL--------------- |
7 | 3v5sA1 | 0.20 | 0.20 | 6.40 | 1.34 | MUSTER | | ILGVGYFLLGLILLYYGSDWFVLGSERIARHPSVVFSLVLLIIGLIGVLVGAELFVDGAK |
8 | 5xtcr | 0.10 | 0.10 | 3.67 | 0.80 | CNFpred | | --DLKSLIAYSSISHMALVVTAILIQPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHS |
9 | 5yd1A | 0.16 | 0.15 | 4.98 | 0.49 | HHsearch-2 | | RRLVMNVAFFFLTFFFIIPIAFVQSL--ATIKSLIQGLLIALKLFLIFLP--AILMTMSK |
10 | 2mp8A | 0.09 | 0.08 | 3.20 | 0.95 | Neff-PPAS | | SSYAAKKVIDIINTGSAVATIIALVTAVVGGGLITAGIVATAKSLIKKYGAKYAAAW--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|