Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | GKPIKLTYTGRIFCVHCGRQTKKSFNQGYCYPCFITLAQCDMCIMKPETCHYEAGTCREPAWADEFCFQPHIVYLANSSGIKVGITRQNQIPTRWIDQGAVQALPIFKVQSRYISGLIEVAIAQHVSDKTSWQKMLKNHAESVDLAAKRDELIAVCKAELANIAERFGQQAIEVLTHEQVVAIHYPVDNYPVKVKSFNFDKQPEVAGVLHGIKGQYLMLDTGVINIRKFTGYEV |
1 | 5nd1A | 0.14 | 0.11 | 3.79 | 0.67 | SPARKS-K | | AQNVTYDWPQ---------------NESGCPVQFIALP------VPSTITHYA---------------TPAIGWFATTAGSKVGLNSDDRAGVHVF---AYGRSTIVSSPLGCAEAMAAMVIAGEHKVVRRHTSIARAQSA---------RTANIVAGAVLGARNGDM--MTIIRPSTSAVHLRIPMLPITDGDCDLVVADTRTRPGRMSGVLASDYHVDIATGNIRHVAREVY |
2 | 2ej9A | 0.12 | 0.08 | 2.89 | 0.47 | FFAS-3D | | -----------------------------------------------------IDSTNDYAKELAKEGKRNFIVLADKQN--NGKGRWGRVWYS--DEGGLYFSMVLDSKLYNPKVIIIEVLKNYVDKELGLKSLKEITGKELDKVEILSNFLKTFESYLEKLKNK-------EIDDYEILKKYKKYSITIGKQVKILLSNNEIITGKVYDIDGIVLGTEKGCIHVR------- |
3 | 1ywlA | 0.18 | 0.06 | 1.81 | 0.40 | HHpred | | ----------------------------------------------------------------MENKKSHYFYVLLCQDFYGGYTT--EPERRLTETGAKYMIHTEKFETRSEATKAEAAFKKLT--RKQKEQYLKTFH---------------------------------------------------------------------------------------------- |
4 | 3agjA1 | 0.12 | 0.09 | 3.33 | 0.70 | MUSTER | | KPHMNLVVIGH---VDHGKST--LYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTII-FVKNMITGASQ-ADAAILVVSARK----GEFEAGMSTEGQTREHLLLARTMGIEQIDAPDYDQKRYEFVVSVLKKFMKGLGYQ----VDKIPFIPV---LIERSPNMPWYNGPTQPP------------------------------ |
5 | 4jndA | 0.12 | 0.06 | 2.12 | 0.56 | CNFpred | | ---------------------------------------------------------------------DRFLAYPN-----GQYMDRGE---------PISVLAVFDGHGHECSQYAAGHLWE------TWLEVRKSRDPSDSLEDQLRKSLELLDERMTVRSVKECWKGGSTA----VCCAIDMD--------------QKLMALAWLGDSPGYVMSNIEFRQL-------- |
6 | 1ywlA | 0.17 | 0.06 | 1.96 | 0.52 | HHsearch-2 | | ----------------------------------------------------------------MENKKSHYFYVLLCQDFYGGYTT--EPERRLTETGAKYMIHTEKFETRSEATKAEAAFKKLTR--KQKEQYLKTFH-----------------------LEHHHH--------HH------------------------------------------------------- |
7 | 1xu4A2 | 0.13 | 0.10 | 3.41 | 0.77 | Neff-PPAS | | -------------------------------------------------QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGKGDKRVAKLYDSPHIFRITEKGIQD--------- |
8 | 1ywlA | 0.17 | 0.06 | 1.96 | 0.66 | HHsearch | | ----------------------------------------------------------------MENKKSHYFYVLLCQDFYGGYTT--EPERRLTETGAKYMIHTEKFETRSEATKAEAAFKKLT--RKQKEQYLKTFHL-EHH----------------------H--------HHH------------------------------------------------------- |
9 | 3by9A | 0.14 | 0.08 | 2.62 | 0.53 | SP3 | | ----------------------------------------------------------------------------------------------------RFQYQALLNEHQSQLDRFSSHIVATLDKYAHIPHLISKDKELVDALLQNSAQIDITNRYLEQVNEVIQAADTYLIDRFG-NTIASSNWNLDRSFIGRNFAWRPYFYLSIAGQKSQYFALGST-------SGQRG |
10 | 2nxfA | 0.09 | 0.08 | 3.08 | 0.73 | PROSPECTOR2 | | DPVFTFGLADIEDGENYLRTRRRYYRRDASDRALDTVAELDACNFSRPSLLSSRLNSAQGSDLIGDDIYAYEFSPA--PNFRFVLLDAYDLSVIGREEE-----------SEKHTHSWRILTQHNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHK-------------QERVLIFSHLPVHPCAADPICLAWNSHQSVLCFIAGSSGAQHITLEGVIETPPSHAFAT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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