>PF10974 (324 residues) DGSLREPGWSKSLVQTYDRKQIKAPRMRIKEWDYYLVLNEDFAGAFTLSDDGYIGLQSVS LLNFKEGWEHTETILNAFPMGKMQMPSDSRQGDIVYRDKRLHMEYTLEEGQRRIRCKFDN FYQGKTFRCDITLVQPKMDTMVIATPWKEKKTAFYYNQKINCMPAKGKMEYDGKIYRFDP STDFGTLDWGRGVWTYDNRWYWGSGNQMIDGKPFGFNIGYGFGDTTAASENMLFYDGKCH KLDDVTFHIPDGDYMKPWKFTSSDGRFEMNFEPVLDRAARTNALIIESDQHQVFGRMNGK AVLDDGTVIEVKDMMCFAEDVHNR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DGSLREPGWSKSLVQTYDRKQIKAPRMRIKEWDYYLVLNEDFAGAFTLSDDGYIGLQSVSLLNFKEGWEHTETILNAFPMGKMQMPSDSRQGDIVYRDKRLHMEYTLEEGQRRIRCKFDNFYQGKTFRCDITLVQPKMDTMVIATPWKEKKTAFYYNQKINCMPAKGKMEYDGKIYRFDPSTDFGTLDWGRGVWTYDNRWYWGSGNQMIDGKPFGFNIGYGFGDTTAASENMLFYDGKCHKLDDVTFHIPDGDYMKPWKFTSSDGRFEMNFEPVLDRAARTNALIIESDQHQVFGRMNGKAVLDDGTVIEVKDMMCFAEDVHNR | |||||||||||||||||||
1 | 2ichB | 0.15 | 0.13 | 4.44 | 1.22 | SPARKS-K | ------------LAPVVPGKALEFNDFRI-EWWYVTGWLETLGFQITFFRTAQLIIAHVALSDPAIGKLQHDQKIARAGFDYARTGNT------DVKLDDW--IFVRETDRYRTRIEAED------FTLTFILTQPLLQGENGFSRKGPGAPQASYYYSEPHLQVSGIINRQGEDIPVTGTAWLDREWSSEYLDPNAAGWDWISANLD-DGSALAFQIRGK--DDSKIWAYAALRDGHTRLFTQVSFHPIRTQAVYPTRVLTGE--TEWQITPLDDQ-------ELDSGAVYWEGAV--TFTRDGQPAGRGYELTGYVR----- | |||||||||||||
2 | 2ichA | 0.15 | 0.12 | 3.98 | 2.15 | CNFpred | ---------------------------RIEWWYVTGWLETPLGFQITFFRTAQLIIAHVALSDPAGKLQHDQKIARAG--AYARTG----NTDVKLD--DWIFVRET---DGRYRTRIEA----EDFTLTFILTPS-QPLMLQGSRKGPGAPQASYYYSEPHLQVSGIINRQGEDIPVT---GTAWLDREWSSEYLPNAAGWDWISANLDGSALMAFQIRG----SKIWAYAALRDGHTRLFTQVSFHPI-AVYPVATRVLTG--ETEWQITPLMD------DQELDSRASAGAVYWEGAVTFT---RDGQPAGRGYMELTGYV | |||||||||||||
3 | 2ichB | 0.15 | 0.13 | 4.28 | 1.59 | HHsearch-2 | ---LAPVVP-G---KALEFPQDGAHNDFRIEWWYVTGWTKPLGFQITFFRTANLIIAHVALSDPAIGKLQHDQKIARAGFDLAYARTG----NTDVKLDDWIFVRET-DGRYRTRIE------AEDFTLTFILTPS--QP-LLFSRKGPGQASYYYSE--PHLQVSGIINRQGEDIPVT---GTAWLDREWSSEYLAAGWDWISANLD-DGSALAFQIRGK--DDSKIWAYAALRSGHTRLFTPVSFHPIRTVYPVATRVLTG--ETEWQITPL-DDQELDSRA------SAGAVYWEGAVTFTRGQP----AGRGY-ELTGYV | |||||||||||||
4 | 2ichB | 0.13 | 0.11 | 3.75 | 1.16 | Neff-PPAS | ------------------------NDFRIEWWYVTGWLEKPLGFQITFFRTDQLIIAHVALSDPAIGKLQHDQKIARAGFDLAYART----GNTDVKLDDWIFVRE-TDGRYRTRIEAE------DFTLTFILTPSQLQGENGFSRKGPGAPQASYYYSEPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDNAAGWDWISANLD-DGSALAFQIRG--KDDSKIWAYAALRDGHTRLFTPDQVSFHPIRTWRATRVLTGE--TEWQITPL-------DDQELDSRASAGAVYWEGTFTRDGQPAGRGYELTGYVR----- | |||||||||||||
5 | 2ichB | 0.15 | 0.13 | 4.36 | 1.98 | HHsearch | ---LA-P---VVPGKALEFPQDGAHNDFRIEWWYVTGETKPLGFQITFFRTANLIIAHVALSDPAIGKLQHDQKIARAGFDLAYARTG----NTDVKLDDWIFVRET-DGRYRTRIE------AEDFTLTFILTPS--QP-LLFSRKGPGQASYYYSE--PHLQVSGIINRQGEDIPVT---GTAWLDREWSSEYLAAGWDWISANLD-DGSALAFQIRGK--DDSKIWAYAALRSGHTRLFTPVSFHPIRTVYPVATRVLTG--ETEWQITPL-DDQELDSRA------SAGAVYWEGAVTFTRGQP----AGRGY-ELTGY- | |||||||||||||
6 | 4hdjA | 0.09 | 0.08 | 3.06 | 1.00 | PROSPECTOR2 | GDGQGDLYNLLEPAVDGSTIYAASAEGRVMAIQLWKKDLERPVSGGVGVGYGLVLVGDVIALDEATGKKKWTKRVNSEVLSAPATNGDTQDDKLIGASGDQRWIYESTVPVLTLRGTGAPLIAGNMALAGVAVDVQRGLPIWEQRVAIPQGRSELDRVVDIDGGL---LLSGDTLYVVSYQGRAAALDVNSGLWQREASSYVGVAVSQASGSVEGLDSRGADALARRQLSAPAVFSSNVVVGDLHLLSQVDGRFV--GRERVDSDGV--------------RVRPLVVGSWMYVFGNGGKLV-----AYTIRP----------G | |||||||||||||
7 | 6fb3A | 0.06 | 0.05 | 2.15 | 1.47 | CNFpred | ---------------------------NSIEWRLRKEQI-KVTVFGRKLRVH-GRNLLSIDYDRN-IRTEKIYDDHRKFTLRIIYDQL--GRPFLWLPSLAAVNVSYFFNGRLAGLQRG------AMSERTDIDK--QGRIISRMFAD--GKVWSYTYLE----KSMVLLLRQYIFEYDSSDRLHAVTMP-----SVARHSMSTHTSVG-YIRNIYNPPE------SNASVIFDYSDRILKTSQVFYKYGKL--SKLSEIVYDSTAVTFGYKMVNLQSGGFSCTIRYRKIGPLVDKQIYRFSEMVNARFDYTYSFRIASIKPII | |||||||||||||
8 | 3h6jA1 | 0.07 | 0.06 | 2.43 | 1.10 | Neff-PPAS | RATEHVGGSDGRVVFSKLAPTIVAQAGGQDFRDVAGGTMPSGRIVAASTVYETGEVKVYVSDDS--GVTWVHKFTLARGGADYNFAH----GKSFQVGARYVIPLYAATGVNYELKWLESSDGGETWGEGSTIYSGNTPYNETSYLPVGDGVILAVARVGSGAGGALRQFISVTAQNGDSTDILVAPSLSYIYSEGGTPHVVLLYTNRTTHFCYYRTILLARAVA----------GSSGWTERVPAYSAPAASGY-TSQVVLGGRRILGNLFRETSST-----TSGAYQFEVYLG----------------------------- | |||||||||||||
9 | 2ichB1 | 0.12 | 0.06 | 2.27 | 1.14 | HHsearch | ---LA----PVVPGKALEFPQDGAHNDFRIEWWYVTGWTPPLGFQITFFRTAQLIIAHVALSDPAIGKLQHDQKIARAGFDLAYARTGN----TDVKLDDWIFVRET-DGRYRTRIE------AEDFTLTFILTPS--QPLNGFSRKGPGQASYYYS--EPHLQVSGIINRQGEDIPVT---GTAWLDREWSSEY--------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 5y2zB | 0.05 | 0.04 | 1.92 | 1.45 | CNFpred | ---------------------------------IDTFSYLNDEYVVIAQPF--TGKCIFLEWDHVEKTFRNYDNITGTSTVVCKPIVIETQLYVIVAQLSHIYKRDSFANKFIKIQDIEIL-KIRKPNDIETFKIE-NNWYFVVADSSKAGFTTIYKWNGNGFYSHQSLHADVEYLEIVRRTPHLILSSRPVIYQWN-EDVYAVKHFSVKGDVYICLTRFI-----GDSKVMKWGGSSFQDIQRMPSRGS-----MVFQPLQINNYQYAILGSD-----YSFTQVYNWDAEKAKFVKFQELNVQAPRSFTHVSRNFLFASSFKG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |