Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | QQRIILLEGQPRAFTMGSIEYINDQWVFFDDETEEASLLDDNLHQEIEIFQNKVWRKGILFEEGKVGFADDVLTLKNHDKIRVRRHLVYSLERLLEELHDEALIHFVTTLNSLKFSIYDCIYCYNHLTFLNKEQPNSGVNFIVFDNQEHICTVQHHFSYFEKISDRFEFTLNSGKRLIIE |
1 | 4r04A | 0.12 | 0.12 | 4.30 | 0.86 | SPARKS-K | | SNTIEKINTLDSKNIAYNYTDENKYFGAISKTSQKSIIHKKDSKNILEFYNDSNSINVFMKDDGKYYVDNNSISLVSKNQVKVNGLYESVYSSYLDFVTSNFMNLFLDNISNINFVIYFTLVGKTYVEFICDNNKNIDIYFGEWKTSSSKSTIFVVVEPIYNISTSLDFSYEPNKVLIAP |
2 | 6c0bA | 0.14 | 0.13 | 4.36 | 0.58 | FFAS-3D | | ---------DSEGKENGFINGSTKEGLFVSELPDSKVYMDDSKPSDVKVITKDNILTGYYKDDIKISL---SLTLQDEKTIKLNSVHESGVAEILKFMNRKSLMSFLESMNIKSIFVNFLQSNIKFILIISGTTSIGQFEFICDENNN----IQPYFIKFNTLETNYTLYVGNRQNMIVE |
3 | 2lcdA | 0.14 | 0.06 | 2.10 | 0.28 | HHpred | | --------KYRGAFCEAKIKTVKRLKVLLKQDNTTQLVQDDQVGAIVETRTSGSFQEAIISK---LTDSWYTVVFDDGDERTLRRTSLCLKG---------------------------------------------------------------------------------------- |
4 | 6c0bA3 | 0.12 | 0.08 | 2.92 | 0.70 | MUSTER | | -------------------------------------GYYSNNLKDVKVITKDNILTGYYLKDDIKIS--LSLTLQDEKTIKLNS-----------HLDESGVAEILKFMNRKGTSDSLMSFLES-MNIKSI--------FVNFLQSNIKFILDANFIISTTSIGQFEFICDENNNIQPY |
5 | 4r04A | 0.14 | 0.12 | 4.01 | 0.95 | CNFpred | | ---------------KSIIHYKKKNILEFYNDSTLEFNSKDFIAEDINVFMKINTITGKYYV-KSIDF---SISLVSKNQVKVNGLYLSVYSSYLDFVKNSFMNLFLDNISFWGFENINFVIDKYFTLVGK---TNLGYVEFICDNNKNIDIYFGEWKTS---SSKSTIFSGNGRNVVVE |
6 | 3nrlA | 0.11 | 0.04 | 1.41 | 0.64 | HHsearch-2 | | --------------REGTLFYDTGRYDIRFDL-ESFYGGLHC-GECFDVKVKDVWVPVRIEDDWYLVGLN--VSRLDGLRVR-------------------------------------------------------------------------------------------------- |
7 | 4es8A1 | 0.09 | 0.08 | 3.18 | 0.70 | Neff-PPAS | | --------SADGSSGRFFSKGATDSYVFHLIPAKKPGWREHNEVKDSYIKIDKQSIAARYKTSYSVAFKVNTKSLIKDEQGQIASGITVDYRIGSAFNKTTDDSFKISDESKY---ASNVKIEGEEQGFKQREQGDKTISFRTLKEGPMSLVLLSKVEKKPQGDLDVEFKNLKIIDVT-- |
8 | 3nrlA | 0.14 | 0.05 | 1.70 | 0.34 | HHsearch | | --------------REGTLFYDTGRYDIRFDL-ESFYGL-HC-GECFDVKVKDVWVPVRIEDDWYLVGLN-V-SRLDGLRVR-------------------------------------------------------------------------------------------------- |
9 | 6c0bA3 | 0.13 | 0.09 | 3.09 | 0.75 | SP3 | | -------------------------------------GYYSNNLKDVKVITKDNILTGYYLKDDIKIS--LSLTLQDEKTIKLNS--VH--------LDESGVAEILKFMNRKGSTNT-----SDSLMSFLESMNIKSI-FVNFLQSNIKFILDANFIISTTSIGQFEFICDENNNIQPY |
10 | 6c0bA3 | 0.09 | 0.07 | 2.51 | 0.58 | PROSPECTOR2 | | GYY-------SNNLKDVKVITKDNVNIL---------------------------TGYYLKDDIKISL---SLTLQDEKTIKLNSV----------HLDESGVAEILKFMNRKGST-----NTSDSLMSFLESMNIKSIFVNFLQSNIKFILDANFIISGTTSIGQFEFICDENNNIQPY |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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