Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | VLLTIIMQGILISRFNLINTNFPFLDGIPITSSHALEYRYLLNWYLPIISMSFYFSGYLSDLTRIHGITFFVRTYSKSKWIIKQYLCMLMILLLFTIFQTVIFTLLGLGKSTFSTTNFIKSLSIYLLTLLTLFSIQILLELYIKTKISHLIINIYIVSSVLMTNQLYGSSKLLQYLFLPNYGMGFRNGLSQIPEFKIHTIDYLIGLFILLIIQTAVIYLSVNKIKKMDL |
1 | 5do7A2 | 0.12 | 0.11 | 3.88 | 1.32 | SPARKS-K | | VITRLLQNLIMGLFLLFFVLRVR-------SNVLKGAIQDRVGLLYQFVTGMLNAVNLFPVLRAVSD-------YQKWQMMLAYALHVLPFSVVATMIFSSVCYWTLG--LHPEVARFGYFSAALLAPHLIGEFLTLVLLGIVQIVNSVVALLSIAGVLVGSGFKIISYFTFQKYCSEILVVNEFYGLFTQGIQFPGATSRFTMNFLILYSFIPALVILGIVVFKIRDH |
2 | 5v6pA2 | 0.11 | 0.09 | 3.14 | 1.11 | FFAS-3D | | ----TIINTLFMSSL------------------FHERYFFTVAFFGLLLLYLKVFHWILKDRLEAL-LQSINDSTTMKTLIFSRFSFNLVLLAVVYQIITRCISSIYTNQKSDIESTSLYLIQVMEFTMLLIDLLNLFLQTCLKFMYEKAIDVFTRFLKTALHLSMLIPFRMPMMLL---------------------------KDVVWDILALYQSGTSLWKIWRNN- |
3 | 5do7A2 | 0.11 | 0.10 | 3.76 | 0.42 | HHpred | | ----LFLLFFVL---RVRSNVL--KGAIQ------DRVGLLYQFVGATPYGMLNAVNLFPVLRAVSDQESQDGLYQKWQMMLAYALHVLPFSVVATMIFSSVCYWT--LGLHPEVARFGYFSAALLAPHLIGEFLTLVLLGIVNPNIVNSVVALLSIAVLVGSGFLRQEPKIISYFTFQKYCSELVVNEFYGEKCPGATSRFTMNFLILYSFIPALVILGIVVFKIRDH |
4 | 5do7A2 | 0.12 | 0.11 | 4.01 | 1.10 | MUSTER | | RLLQNLIMGLFLLF---------FVLRVRSNVLKGAIQDRVGLLYQFVGATPYTGMLNAVNLFPV-LRAVSDQLYQKWQMMLAYALHVLPFSVVATMIFSSVCYWTLG--LHPEVARFGYFSAALLAPHLIGEFLTLVLLGIVQPNIVNSVVALLSIAGVLVGSGFLRNIQIISYFTQKYCSEILVVNEFYGLNFTCAFTQFTMNFLILYSFIPALVILGIVVFKIRDH |
5 | 3rkoB | 0.09 | 0.09 | 3.31 | 1.21 | CNFpred | | LDGLSLTMLSVVTGVGFLIHMYASWY----GEEGYSRFFAYTNLFIASMVVLVLADMYLGWEGVGLCSYLLIGFY-GDVFLAFALFILLMWATLMLLGGAVGKSATWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAA-IKRVLAYSTMSQIGYMFLALGVQ-----AWDAAIFHLMTHAFFKALLFLASGSVILACHHE |
6 | 5do7B2 | 0.09 | 0.08 | 3.21 | 1.37 | HHsearch-2 | | FTTLIRRQISNDFRDLPSMTIGFLYFGHGSI--QLSFMDTAALLFMIGALIPFNILDVIYSERAMLYYELEDGLYTTGPYFFAKILGELPEHCAYIIIYGMP----TYWLANLRGQPFLLHFLLVWLVVFCCRIMALAAAALLTFHMASFFSNALYNSFYLAGGFMINSWAWISKVSFLRWCFGLMKIQFSRRTYELDSYPLYAIYLIVIGLSGGFMVLYYVSLRFIKQ |
7 | 5do7A2 | 0.12 | 0.12 | 4.15 | 1.21 | Neff-PPAS | | VITRLLQNLIMGLFLLFFVLRVR-----SNVLKGAIQDRVGLLYQFVGATPYTGMLNAVNLFPVLRAVSDQESQYQKWQMMLAYALHVLPFSVVATMIFSSVCYWTLGL--HPEVARFGYFSAALLAPHLIGEFLTLVLLGIVNPNIVNSVVALLSIAGVLVGSGFLRNIKIISYFTFQKYCSILVVNEFYGLNFTCAFTRFTMNFLILYSFIPALVILGIVVFKIRDH |
8 | 5do7B2 | 0.08 | 0.08 | 3.09 | 1.22 | HHsearch | | QQFTTLIRRQISNRDAEAMTIGFLYFGHGSI--QLSFMDTAALLFMIGALIPFNVLDVIYSERAMLYYELEDGLYTTGPYFFAKILGELPEHCAYIIIYGMPT----YWLANLRGQPFLLHFLLVWLVVFCCRIMALAAAALLTFHMASFFSNALYNSFYLAGGFMISSWTWISKVSFLRWCFGLMKIQFSRRTYELDSYPLYAIYLIVIGLSGGFMVLYYVSLRFIK- |
9 | 5do7B2 | 0.08 | 0.08 | 3.06 | 1.20 | PROSPECTOR2 | | GAEACLMSMTIGFLYF------------GHGSIQLSFMDTAALLFMIGALIPFNVILDVISKCYSERAMLYDGLYTTGPYFFAKILGELPEHCAYIIIYGMPTYWL--ANLRPGLQPFLLHFLLVWLVVFCCRIMALAAAALLPFHMASFFSNALYNSFYLAGGFMINLSSLWTVPCFEGLMKIQFSRRTYKMPLGNLTYPLYAIYLIVIGLSGGFMVLYYVSLRFIKQ |
10 | 6an7D | 0.16 | 0.14 | 4.52 | 0.47 | SAM | | -LLVLIYTLIFSHLI---------------TVYAYSIYLSSGIFPWFFFSNSLSRITGIFTEKK---FLFTKIPIRLEVFPVVVIISELINYLIGISLVTL-ISFITGFEG----IKYFYLFPALYLMIVYSFSIGMVLGTLNFFRDIKEIIGVFLQIFFWFTPIVYPFVKKLIYYNPMYPVVSIHHLVFVNYLD-----LHLYSLLGFLLASPLVFFVSYYFFKKLE- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|