Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | DAAVVLFSLTVAVAAPLIDAQSVLPRHLFPAPLVSLKRWYAREFGDYLVARPPGFLRGLVWLELAFLWPLALATLYGILARRRWAATTSLIAGVSTLTSMSAILGEIVGSKKATLKLLQMYVPFAVFAVIAILRGLC |
1 | 2x1gF5 | 0.05 | 0.05 | 2.38 | 0.90 | SPARKS-K | | YTIEGCVTITAVLLEVVHKCYWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGDPELSILVHRIVQEILHCTDKPGIYPV |
2 | 2mgyA | 0.15 | 0.14 | 4.66 | 0.87 | FFAS-3D | | SWVPAVGLTLVPSLGGFMGAY---------FVRGEGLRWYAGLQKPSW--HPPRWTLAPIWGTLYSAMGYGSYIVWKELGGFTWPPIWALADLLLVSGVATATTLAWHRVSPPAARLLYPYLAWLAFATVLNYYVW- |
3 | 6ohtA | 0.15 | 0.15 | 4.91 | 0.82 | HHpred | | RRLSLCWFAVCGFIHLVIEGWFLYYEDLLQAFLSQLWKEYAK--GDSRYILGDNFTVC-ETITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYLTEHRDGFQHGHYFVF-NALWLVLPGVLVLDAVK |
4 | 6ohtA | 0.13 | 0.13 | 4.53 | 0.87 | MUSTER | | RRLSLCWFAVCGFIHLVIEGWFVLYEDLLQAFLSQLWKEYAKG--DSRYILGD-NFTVCETITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDELGHPLYFWFNALWLVLPGVLVLDAVK |
5 | 3rkoB | 0.13 | 0.12 | 4.33 | 0.99 | CNFpred | | MWATLMLLGGAVGKSAQLPLQTWLADAMGPTPVSALIHTMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAAL---QTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVI |
6 | 5tj5A | 0.06 | 0.06 | 2.57 | 0.81 | HHsearch-2 | | GLLFMQGIFGYLSVCIVYKWAVDWVGKPAPGLLNMLINMFLSPGTIELY-PHQAKVQVFLLLMALVCIPWLLLVKPLHFKFDIMIVIHTIEFCLNCVSHTASYLSSVLWTMTGFVMTVALFAMWFALTCAVLVLMEG |
7 | 6ohtA | 0.11 | 0.11 | 3.95 | 1.00 | Neff-PPAS | | RRLSLCWFAVCGFIHLVIEGWFVLYEDLLGDQAFLSQLWKEYAKGDSRYIL-GDNFTVCETITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGLYFWFYFVFNALWLVLPGVLVLDAVK |
8 | 5tj5A | 0.08 | 0.07 | 2.94 | 0.50 | HHsearch | | GLLFMGYLSVCIVYKWAVDWVK--DGKPAPGLLNMLINMFLSPGTIELY-PHQAKVQVFLLLMALVCIPWLLLVKPLHFKFDIMIVIHTIEFCLNCVSHTASYLSSVLWTMTGFVMTVALFAMWFALTCAVLVLMT- |
9 | 6mjpG3 | 0.15 | 0.14 | 4.66 | 1.19 | SP3 | | -----------SLAPDKLAVVTVKPEELSLTGLSDYVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGR |
10 | 1t33A | 0.08 | 0.08 | 3.17 | 0.64 | PROSPECTOR2 | | MYLACAQWIADFLGEKFRPHAEKAERLFSQELILLACKNMIMLLTQEEQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTGCDAILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCHIDLILHGLQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|