Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | TKRWLLVCSCLLMLTGMRDPFKPPEDRCRIAELPMWRYQGVVSQGERLTGILKDSQQKWRRVEQYQVLENGWTISRLTADSITLETGKGCEPSQWRWQRQGEVNEAMDSRSVDRRDARRTGGESAKRDAGGG |
1 | 2lc4A | 0.08 | 0.06 | 2.43 | 1.26 | SPARKS-K | | -----DLTVRQKGNKVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGA-GGVHRVRVGDYLGRDGKVVGISEGKIDVIEIGNWLERPRSLTLKERSLEHHHHHH--------------------- |
2 | 3jc8Pa | 0.19 | 0.14 | 4.39 | 1.13 | FFAS-3D | | --------------VGKRDPFRSCNEPLCSFDLDQLKLVAVVTGDASPVAMVEDPAGRGHIVRRNTRMGQGGKVTQILRDSVTVTEGNGEIIKN-PVTLQLKPDAKQD------------------------ |
3 | 2lc4A | 0.16 | 0.12 | 4.01 | 1.24 | HHpred | | ----------LTVRQKGNKVIKPDETRVKLENIETFEMVGTLSNAQGTFALVK-GAGGVHRVRVGDYLGRDGKVVGISEGKIDVIEGEGNWLERPRSLTLKERSLEHH------------------------ |
4 | 2ivwA | 0.19 | 0.14 | 4.66 | 1.31 | MUSTER | | -------------ETDKKGENAPDTKRIKETSLENMRYVGILKSGQKVSGFIEA-EGYVYTVGVGNYLGNYGRIESITDDSIVLNE-TGNVSRKAELLLNSSDKNTEQAAAPAAEQN--------------- |
5 | 2y4xA | 0.12 | 0.06 | 2.14 | 1.20 | CNFpred | | --------------------------------IETFEMVGTLSNAQGTFALVKGA-GGVHRVRVGDYLGRDGKVVGISEGKIDVIEIVPDGEGNWLERP--------------------------------- |
6 | 3jc8Pa | 0.17 | 0.14 | 4.48 | 2.62 | HHsearch-2 | | GAQAAPSSYVY-NPVGKRDPFRSPIDEGPLFDLDQLKLVAVVTGDASPVAMVEDPAGRGHIVRRNTRMGRGGKVTQILRDSVTVTEVNGEIIKPVTLQLKPD-AKQD------------------------- |
7 | 3jc8Pa | 0.15 | 0.11 | 3.59 | 1.56 | Neff-PPAS | | --------------VGKRDPFRSCNEPLCSFDLDQLKLVAVVTGDASPVAMVEDPAGRGHIVRRNTRMRQGGKVTQILRDSVTVTEVFSGNGEIIKNPVTLQLKPDAKQD---------------------- |
8 | 3jc8Pa | 0.18 | 0.14 | 4.69 | 3.22 | HHsearch | | GAQAAPSYSYVYNPVGKRDPFRSPIDEGPLCDLDQLKLVAVVTGDASPVAMVEDPAGRGHIVRRNTRMGRGGKVTQILRDSVTVTEVNGEIIKPVTLQLKPD-AKQD------------------------- |
9 | 2ivwA | 0.20 | 0.16 | 5.08 | 0.80 | PROSPECTOR2 | | E-------------TDKKGENAPDTKRIKETSLENMRYVGILKSGQKVSGFIEA-EGYVYTVGVGNYLGQNGRIESITDDSIVLNESTGNWVSRKAELLLNSSDKN--------------TEQAAAPAAEQN |
10 | 3jc8Pa | 0.23 | 0.12 | 3.80 | 0.99 | SAM | | -------------PVGKRDPFRSPID---LCDLDQLKLVAVVTGDASPVAMVEDPAGRGHIVRRNTRMGRGGKVTQILRDSVTVTE---------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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