Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | WFAQAVGVLAFLVGITSFFNRDDRRFKLQLSGYSLTIGIHFFLMGANAAGSSALLSACRNLVSMRTRSLWVMWLFLSLTLVMGLSRYQHWVELLPIFGTSISTWALFRTRGLTTRCVMWCSTACWVTHNIWLGSIGGSLIEGSFLLMNGFNILRFRR |
1 | 6eyuA | 0.09 | 0.09 | 3.41 | 1.10 | SPARKS-K | | AYIITAMISGLLFLYLPRKLDVPQKFGIIHFFIVVWSGLMYTNFLDWMVSTPLILLALGLTAFHGTKRYDLLGALLGAEFTLVITGLLAVLLLLGVVYLLAGLARAYKILAGYIGIFFLSYPTVWYISGPTQTSIALVVLPFFCKQVYGFLDMYLIH |
2 | 5ctgA | 0.09 | 0.09 | 3.39 | 1.37 | FFAS-3D | | -SCFAAGLAGNIFALALFLSPVKAKPYLFSLLNCLICLWYGLPWVATVNGIGAVFQLAYICLFIFYADSKIIGLLVLVVCGFALVSHPLRQQFVGAVSMASLISMFASPLPFYLSLSTFLMSASFALYGLLLRDFFIYFPNGLGLILGAMQLALYA- |
3 | 5kbwA | 0.14 | 0.13 | 4.60 | 1.00 | MUSTER | | SFVGIFSALATLVMFLEFPIFPQASF-LKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAF-ALGLNALIVPLYFEAPFELYLKFFPFILAFNLVKFGIDSVVTFFVYK |
4 | 3rkoB | 0.08 | 0.08 | 3.21 | 1.12 | CNFpred | | FVVTRVGDVFLAFALFILYNE-MLMWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAA--TMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAA-IKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASG |
5 | 1xioA | 0.10 | 0.10 | 3.75 | 1.09 | SPARKS-K | | WIYVAGMTIGALHFWSLSPRGVPQYEYLVAMFIPIWSGLAYMAMAIYIDWMVTTPLLLLSLSWTAMQFIGFLMSTQIVVITSGLIADLSYLWYICGVCAFLIILWGIWRAKTLYDKLVTYFTVLWIGYPIVWITFLFCLLPFFSKVGFSFLDLHGLR |
6 | 5xpdA1 | 0.05 | 0.05 | 2.36 | 1.35 | FFAS-3D | | -WAFVFGILGNIISFVLFLAKKKSLPYVSALFNAMLWIYYAMQKDITINAFGCVIETIYIVLFVSYANKKTRILGFAAIVLVCELLTKGVLGGICVGFSVSMFAAPLSIMPFSLSLFLTINAVTWLFYGLAIKDFYVALPNVLGAFLGAVQMILY-- |
7 | 5xpdA | 0.08 | 0.08 | 3.24 | 0.25 | HHpred | | LWAFVFGILGNIISFVLFLAPVPKLPYVSALFNAMLWIYYAMQKDGTLLITINAFGCVIETIYVSYANRILKVLGFAAIVLVCELLGSTREKVLGGICVGFSVSMVVRTRPFSLSLFLTINAVTWLFYGLAIKDFYVALPNVLGAFLGAVIIFKYYK |
8 | 3p5nA | 0.12 | 0.11 | 4.08 | 0.98 | MUSTER | | ITISMLSAIAFVLTFIKFPIPFLPPYLTL-DFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYSLITGLIIATIVMTIVLSIL--NYFVLLPLYGMKVIIVSGIIPFNIIKGIVISIVFILLYRRLANFLK |
9 | 3rkoC | 0.08 | 0.08 | 3.05 | 1.09 | CNFpred | | VMLIAILALVWTFNYEELLNT-VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMA-IKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFI |
10 | 4rngA | 0.22 | 0.10 | 3.02 | 0.82 | HHsearch-2 | | ----------------------------------------------------------------------------------------DLNNLIGIIAGAITTSALYKTKSLAMFIFMAIGITLWFFYGVLIKEIPVILANLISLILIFLIIFMKIR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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