Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MSDPNDDSIPVLHEILVQGHPVQARQASHDAAGFDAPREPGFKAEPVLAPQPVLTPEQVRSVQPVHAAEPEHAQAPGFAAQPVHAQEPAFAAQPVHAQEPAAFAPQPHAQEEAAHTAQPSHPADHHHPKKRARAHHAAQPRHAHDDGYVPSAGVFDRAEPATPLEAGSTVPPDIAREGASEAPLDLDADVIAERLRGRVAEFLASDGRSIIEDRCRETLQAHTGWLINQITREVALTLEKEMTGWVREAVLEEIARRA |
1 | 4k0mC | 0.19 | 0.14 | 4.36 | 1.02 | MUSTER | | RTAKFDETV----EVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------------------------------------------------- |
2 | 2tmaA | 0.08 | 0.08 | 3.09 | 1.01 | Neff-PPAS | | LKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK |
3 | 5gaoE | 0.18 | 0.17 | 5.58 | 1.22 | PROSPECTOR2 | | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAKEAYKKLSQKFHGTKSNKK |
4 | 5yfpH | 0.05 | 0.05 | 2.33 | 0.86 | SPARKS-K | | RMRRDRSSVLILEK--FWDTELDQLFKNVEGAQKFINSTKGRHILMNSANWMELNTTTGKPLKSRDKQNDFIVSQCYPLKDVTVTQEEFSTKRLFSNSNSSLYECRDADECSRLLDVIRKAKDDLCDIFHVEEENSKRIRESFRYLQSTQQ-----TPGRENNRSPNKNKRRSMGGSITPD-MSSTAQRELAVETLLDIESQLEDLSLML-LNLISLKIEQRREAISSKLSQSNMIKLPEQALDLFLQNRSNFIQDLI |
5 | 5mrcUU | 0.12 | 0.09 | 3.15 | 0.64 | FFAS-3D | | ----------------------------------------------LLKETPAWYNVVASIP-PSTKFTREPRFKNPSNGHIIGKLVDVTEQPHANNKGLYKTRPNSSDKRVGVKRLYRPPKLTYVEDRLRSLFYK----QHP-----------WELSRPKILVEEIGDENYDWSH--MLQIGRPLDGESVIQRTMYLIKT---KQYGDMVEAYDHARYEFYALRMQEETEQQVALGIQKELDVWEKKVVEETELMAA |
6 | 6mvrA1 | 0.15 | 0.06 | 1.97 | 0.27 | HHpred | | -------------------------------------------------------------------------------------------------------------------------------------FGHFIGGA------WTAPGDLFATVNPAT----GQTLA-------QVSQATQADVDAAVKAARKAQPAWADGAARARVLYALARLLQKHARLFAVLETLDIREARDIDVPLAQYHHAGY------ |
7 | 2m64A | 0.11 | 0.10 | 3.49 | 0.82 | MUSTER | | -----------------------------PAGKATTEEQKLIEKINAGFKAALAAAAGVQPADKYRTFVATFGAASNKAFAEGLSGEPKGAAESSKAALTSKLDAAYKLAYKTAEGATPEAKYDAYVATLSEALRIIAGTLEVHAVKPAAEEVKVIPAGELQVIEKVDAA--KVAATAANAAPANDKFTVFEAAFNDAIKASTGGESYKFIPA-LEAAVKQAYAATVATAPEVKYTVFETALKKAITAMSEAQKAAKP |
8 | 4x0rA | 0.09 | 0.02 | 0.90 | 0.48 | CNFpred | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VHQYIQQLVEPALSMLQ-KAMEIIQQAFINVAKKHFNQTVQSTIEDIKVKHTAKAENMIQLQFRMEQMVFK |
9 | 4dhxB | 0.15 | 0.05 | 1.57 | 0.38 | HHsearch-2 | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAQMRA-AINQLIETGERERLKELLRAKLI---ECGWKDQLKAHCKEVIKEKVDDLVAEITPKVPDSVKKELLQRIRTFLAQHA---- |
10 | 4ke2A | 0.15 | 0.11 | 3.67 | 1.01 | Neff-PPAS | | --------------------------------------------NIDPAARAAAAAAASKAAVTAADAAAAAATIAASAASVAAATAADDAAASIATINAASAAAKSIAAAAAMAAKDTAAAAASAAAAAVASAAKALETIN----------------------VKAAYAAATTANTAAAAAAATATTAAAAAAAKATIDNAAAAKAAAVATAVSDAAATAATAAAVAAATLEAAAAKAAATAVSAAAAAAAAAIAFA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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