Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LLVLLSALGFVCASGESAKTVDFNVKPGGVVHSFSEKIKEYECIFTYASQGGTNEQWQMSVGLSDDDRLFSCSVWRPQGKSYLFFTQFKAEIKGAKIEYASAYSQAAVGGQKDVPLKDEEYAVGDTTVTHKDGKFRAELSKLTLIGRTRHDEL |
1 | 6beaA3 | 0.11 | 0.10 | 3.76 | 0.74 | SPARKS-K | | IINGGIETIVTAGNKTGIHTVNLNIKDGSV---IGAANNKQTIYASASAQGAGSATQNLNLSVADSTIYSDVLALSESENSASTTTNVNMNVAR---SYWEGNAYTFNSG-DKAGSDLDINLSDSSVWKGVSGAGDASVSLQNGSVWNVT--- |
2 | 4cyfA2 | 0.18 | 0.15 | 4.88 | 0.67 | FFAS-3D | | --------------------DEFTVKLTGVAGNYTVCQKDLCCHLSYKMSENPNEVYALGAGLHTVEGRYICTLGDSAETASTRFEMFSLSGTGTQYVFPEVLLS-------ENQLAPGEFQVSTDGRLFSLKPTSGPVLTVTLFGRLYEKD- |
3 | 5f4jA | 0.13 | 0.11 | 3.82 | 0.32 | HHpred | | ------------NSRFPAPIDSLFTAQNNN-LNVQPGICAFRGRLTADVDGSHDDRWHMQLTNL-NGTPFDPTEDVPAPLLFGVASQRNVGSNPNTTRAHEAVI----STTSSVPLGSVNFGST------STDFQLQQPTKFTPVGIKIE--- |
4 | 5e7fG | 0.16 | 0.13 | 4.35 | 0.79 | MUSTER | | VSVDGDFTMKKFADSY---VAFFANKGSGNTVTFTAPWDTAEVELFYHGWGYSGGEWEIGITT-------------PSGLTQIYEAT--GYTNGHDNQAISMPTKAIYSGLK----KGLQYTFDIRDANGRGG--GPKHPMMIVKLYRNA--- |
5 | 4anjA | 0.11 | 0.09 | 3.32 | 0.93 | CNFpred | | --DFFKSAMPE------GYVQERTIFF--------KDDGNYKTRAEVKFEG-DTLVNRIELKGID-YNSHNVYIMADK-QKNGIKVNFKIRHNIGSVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDP-NEKRDHMVLLEFVTAAG--- |
6 | 1igtB1 | 0.14 | 0.07 | 2.25 | 0.35 | HHsearch-2 | | -------------EVKLQESGGGLVQPGGS--------LKLSCATSGFTFSDYYMYWVRQMSRSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSA---------------------------------------------------------- |
7 | 5e7fG | 0.12 | 0.10 | 3.46 | 0.74 | Neff-PPAS | | -----VDGDFTMKKFADSYVAFFANKGSGNTVTFTAPWDTAEVELFYHGWGYSGGEWEIGITT-------------PSGLTQIYEATGYTNGHDNQAISMPTKAIYSGLK------KGLQYTFDIRDANGRGGGPKHPMMIVKLYRNA----- |
8 | 6oanB2 | 0.20 | 0.10 | 3.13 | 0.33 | HHsearch | | ---------SY--ELTQP--SSVAVAPGQTA--------RIPCGGDWYQQGGIGNTATLTVSRAGDEADYYCQVWDTSSEHPVFGGGTKLTVLGQ---------------------------------------------------------- |
9 | 4cyfA | 0.17 | 0.16 | 5.35 | 0.76 | SP3 | | VVNWTSYASSIEALSSGNKEFKGTVFLTGVAGNYTVCQKDLCCHLSYKMSENIPNE-VYALGAFDEGRLQICTLLKSAETASTRFEMFSLSGTGTQYVFPEVLL-------SENQLAPGEFQVSTDGRLFSLKPTSGPVLTVTLFGRLEKD-- |
10 | 5e7fG | 0.10 | 0.08 | 3.12 | 0.64 | PROSPECTOR2 | | DVSVDGDFTMKKFADSY--VAFFANKGSGNTVTFTAPWDTAEVELFYHGWGYSGGEWEIGIT-------------TPSGLTQIYEATGYTNGHDNQAISMPTKAIYSGLKKGL------QYTFDIRDANGRGGGPKHPMMIVKLYR-----NA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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