Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | GAVIFGCKNHTFTECVKKMLFGLPAGHSSYVKNISPGLTLFLFNYSDRKLHGIFEATSCGKMNIDPRAWITNEGSEYTPYAAQVQVAVRRQCQPLHEEEFKPIIAKNYYSEGHFWFELDREQTRRLTELF |
1 | 2p5dA | 0.12 | 0.12 | 4.10 | 1.68 | SPARKS-K | | AYWLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQPPYIRGVYEVVSEVYKD-SSKIFKPTPRNPNEKFPYRVKLKEIKVFPPINFKELIPKLKKRWSGMGKAMREIPEEDYKLIVGN- |
2 | 2p5dA | 0.12 | 0.12 | 4.05 | 1.35 | FFAS-3D | | --WLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRSYIRGVYEVVSEVYKD-SSKIFKPTPRNPNEKFPYRVKLKEIKVFEPIN---FKELIPKLKFITNKKRWEIPEEDYKLIVG-- |
3 | 2p5dA | 0.10 | 0.10 | 3.67 | 0.93 | HHpred | | AYWLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRSYIRGVYEVVSEVYKDSSK-IFKPTPRNPNEKFPYRVKLKEIKVFPPINFKELIPKLK--FITNSGMMREIPEEDYKLIVGN- |
4 | 2p5dA | 0.12 | 0.12 | 4.08 | 1.56 | MUSTER | | AYWLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQPPYIRGVYEVVSEVYKDSSKI-FKPTPRNPNEKFPYRVKLKEIKVFPPIN---FKELIPKLKFITNKKRWEIPEEDYKLIVGN- |
5 | 2p5dA | 0.12 | 0.12 | 4.08 | 1.31 | CNFpred | | AYWLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQPPYIRGVYEVVSEVYKDS-SKIFKPTPRNPNEKFPYRVKLKEIKVFEPPI--NFKELIPKLKFITN-AMREIPEEDYKLIVGN- |
6 | 2p5dA | 0.12 | 0.12 | 4.10 | 1.29 | HHsearch-2 | | AYWLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRSYIRGVYEVVSEVYKDSSK-IFKPTPRNPNEKFPYRVKLKEIKVFPPINFKELIPKLKNKRWSGGKAMREIPEEDYKLIVGN- |
7 | 2p5dA | 0.12 | 0.12 | 4.08 | 1.71 | Neff-PPAS | | AYWLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQPPYIRGVYEVVSEV-YKDSSKIFKPTPRNPNEKFPYRVKLKEIKVFEPIN---FKELIPKLKFITNKKRWEIPEEDYKLIVGN- |
8 | 2p5dA | 0.11 | 0.11 | 3.89 | 2.02 | HHsearch | | AYWLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRSYIRGVYEVVSEVYKDSSK-IFKPTPRNPNEKFPYRVKLKEIKVFPPINFKELIPKLKNKRWSGMKAMREIPEEDYKLIVGN- |
9 | 2p5dA | 0.12 | 0.12 | 4.08 | 0.78 | PROSPECTOR2 | | MDWLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYDYKPPYIRGVYEVVSEVYKDSSKI-FKPTPRNPNEKFPYRVKLKEIKVFEPIN---FKELIPKLKFITNKKRWSIPEEDYKLIVGN- |
10 | 2p5dA | 0.12 | 0.12 | 4.07 | 0.51 | SAM | | --WLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRSYIRGVYEVVSEVYKDSSKI-FKPTPRNPNEKFPYRVKLKEIKVFPPINFKELIPKLKKRWS-MGKAMREIPEEDYKLIVG-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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