Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | RDTMFEEVPQRAGMNSTRIAQVLTLRRSLPPLASVAHVHTLLNGPTRVEKEIFELVTSGRVKRLVVPGRGTDAAGLGDCLVLAEDLEQLVRQSDLNEHLQVDKFLQTISKDTSIPTGAFAPDEYLALVRAGFLVSGRGAPPTSVSLSLPNTGPYLRLLSAGRNHLVALLRKSSYNEAPLELLRDRWDGAVESERSFSVAKRARGEFAGILPGKTKKWRELYGISFRWAVEEALGAGVIEIFDTGSVGVGVRL |
1 | 5w1hA | 0.10 | 0.09 | 3.41 | 0.57 | SPARKS-K | | KADFVPDFAKYVKPYAGLISRVAG-----SSELQKWYIVSRFLSPAQANHMLGFLHSYKQVWDIYTGTEINHSIAEDKIVDAVIDLSVKLCGTISSEISDDEVYAEYISSYLDFEYDGGNKDSLNRFCNS---DAVNDQKVALYYDPKLNRNIILSKLYGERRFLEKITDR-----VSRSDIVEYYKLKKETSQYQTKGI-FDSEDEQKNIKKFQEMKNIVEFDYSEIADELQGQLINWIYLRERDLMNFQL |
2 | 2crpA | 0.11 | 0.06 | 2.30 | 0.71 | FFAS-3D | | -SSGSSGPEKPAKTQKTSLDEALQWRDS---------LDKLLQNNYGLASFKSFLKSEFSEENLE----------------FWIACEDYKKKSPAKMAEKAKQIYEEFIQTEAPKEVNIDHFTKDITMKN-----LVEPSL--------------SSFDMAQKRIHALMEKDSLPRFVRSEFYQELISGPSSG----------------------------------------------------------- |
3 | 1lvaA | 0.12 | 0.09 | 3.08 | 0.34 | HHpred | | ------------GSPEKILAQIIQEHR---EGLDWQEAATRASSLEETRKLLQSA-AAGQVTLLRVE--------NDLYAISTERYQAWWQAVT----RALEEFHSRYPLRPGLARSRLPQALLEEWSREGRLQLAA----N--TVALAGFTSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFN--------------------------------LDPSELEELLHYLVREGVLVKIND---EFYW-- |
4 | 1xwyA | 0.18 | 0.15 | 5.04 | 0.61 | MUSTER | | TSSQFAKDRDDAGVNLRESQQAQKLARQYSSCWSTAHPHDSSQWQAATEEAIIELAAQPEVVAIGECGFNRNFSTPEEQERAFVAQLRIAADLRDAHERFMTLLEPWLDKLPGA-CFTGTREEMQACVAHGI------------YIGI--TGWVCD--ERRGLELRELLPLI-----PAEKL----DAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGED-AAWLAATTDANVKTLFGIAF------- |
5 | 1lvaA | 0.12 | 0.09 | 3.08 | 0.89 | CNFpred | | --------------PEKILAQIIQEHR---EGLDWQEAATRASSLEETRKLLQSMAAAGQVTLLRVE--------NDLYAISTERYQAWWQA----VTRALEEFHSRYPLRPGLAR-RVYQALLEEWSREGRLQLA------ANTVALAGFTPFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSF--------------------------------NLDPSELEELLHYLVREGVLVKIN---DEFYWHR |
6 | 2pffB | 0.15 | 0.14 | 4.79 | 0.68 | HHsearch-2 | | -MDAYSTRPL--TLSHFFIASQL--QEQFNKILEPTEGFAADDEPTTP-AELVGKFLSSLVEPSKVGQFDQLLTEFENCYLEGNDIHALAAKLLQKTKELIKNYITAIPFDSNSANIKFSAETLSELIRTVFLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAYLKGATGHLVTAVAIAESWESFF-----VSVATVLF--FIGV---RCYEAYPNTSLPPSLENNEGVPSPMLSISNLTGAKNLVVS |
7 | 2zcvA | 0.11 | 0.10 | 3.59 | 0.62 | Neff-PPAS | | RNPAKAQALAAQGIDYGDEAALTSALQGVEKLLLIS--SSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLADEHIETEKMLADSGIVYLASAPAALEHGVFIGAAGDGKIASATRADYAAAAAVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGK---QVTYQNLSEADFAAALKSVLPDGLADMLADSDVGASKGGLFDDSKTLSKLIGTTLAESVSHLFN------------------ |
8 | 1lvaA | 0.12 | 0.08 | 2.97 | 0.53 | HHsearch | | ------------GSPEKILAQIIQEHR---EGLDWQEAATRASSLEETRKLLQSA-AAGQVTLLRVE--------NDLYAISTERYQAWWQAV----TRALEEFHSRYPLRPGLARSRLPQALLEEWSREGRLQLAA----N--TVALAGFPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFN-----------------------------L---DPSELEELLHYLVREGVLVKIND---EFYWH- |
9 | 5l3zA | 0.14 | 0.12 | 4.19 | 0.80 | SP3 | | RDLAAPGLPEGVEARPETLARALEVDK----VFL-------YTVPEGIAGFVDEARAAG-VRHVVLLSSIWPDADRDPIGRMHLAVERPIEESGEALATNALGWAPEIRGGDMVRCAYPGEEDIADVVVA--ALTTPGHRSAAYALTGPET----LTQAEQVALIGEALGRARCERMPEQEARAVLEGLYPAEVVDAILAGQA-ARDGRPAEVLDTIRAVTGRTFREWAGDHV-----AAFRPA-------- |
10 | 4infA | 0.09 | 0.09 | 3.30 | 0.76 | PROSPECTOR2 | | MTQDLKTGGEQGYLTADKGMVSLWGFYAQSPSERATQILERLLDLG--ERRIADMDATGIDKAILALTSPGVQPLHDLDEARTDTLADACQKYPQDPEWSAREIHRGARELSHTQGRYLDEEFFDPIFRPATSPDSMIDPMLEAGLDGAIFGFGVETGMHLLRLITIIFDKYPALPYWLYRLDYMH------------QAGVRSQRYERMKPLKKTIEGYLGVAWEPAIKFCQVADEVRAMDAMDMSAQTKL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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