>PF10494 (252 residues) RDTMFEEVPQRAGMNSTRIAQVLTLRRSLPPLASVAHVHTLLNGPTRVEKEIFELVTSGR VKRLVVPGRGTDAAGLGDCLVLAEDLEQLVRQSDLNEHLQVDKFLQTISKDTSIPTGAFA PDEYLALVRAGFLVSGRGAPPTSVSLSLPNTGPYLRLLSAGRNHLVALLRKSSYNEAPLE LLRDRWDGAVESERSFSVAKRARGEFAGILPGKTKKWRELYGISFRWAVEEALGAGVIEI FDTGSVGVGVRL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | RDTMFEEVPQRAGMNSTRIAQVLTLRRSLPPLASVAHVHTLLNGPTRVEKEIFELVTSGRVKRLVVPGRGTDAAGLGDCLVLAEDLEQLVRQSDLNEHLQVDKFLQTISKDTSIPTGAFAPDEYLALVRAGFLVSGRGAPPTSVSLSLPNTGPYLRLLSAGRNHLVALLRKSSYNEAPLELLRDRWDGAVESERSFSVAKRARGEFAGILPGKTKKWRELYGISFRWAVEEALGAGVIEIFDTGSVGVGVRL | |||||||||||||||||||
1 | 5w1hA | 0.10 | 0.09 | 3.41 | 0.57 | SPARKS-K | KADFVPDFAKYVKPYAGLISRVAG-----SSELQKWYIVSRFLSPAQANHMLGFLHSYKQVWDIYTGTEINHSIAEDKIVDAVIDLSVKLCGTISSEISDDEVYAEYISSYLDFEYDGGNKDSLNRFCNS---DAVNDQKVALYYDPKLNRNIILSKLYGERRFLEKITDR-----VSRSDIVEYYKLKKETSQYQTKGI-FDSEDEQKNIKKFQEMKNIVEFDYSEIADELQGQLINWIYLRERDLMNFQL | |||||||||||||
2 | 2crpA | 0.11 | 0.06 | 2.30 | 0.71 | FFAS-3D | -SSGSSGPEKPAKTQKTSLDEALQWRDS---------LDKLLQNNYGLASFKSFLKSEFSEENLE----------------FWIACEDYKKKSPAKMAEKAKQIYEEFIQTEAPKEVNIDHFTKDITMKN-----LVEPSL--------------SSFDMAQKRIHALMEKDSLPRFVRSEFYQELISGPSSG----------------------------------------------------------- | |||||||||||||
3 | 1lvaA | 0.12 | 0.09 | 3.08 | 0.34 | HHpred | ------------GSPEKILAQIIQEHR---EGLDWQEAATRASSLEETRKLLQSA-AAGQVTLLRVE--------NDLYAISTERYQAWWQAVT----RALEEFHSRYPLRPGLARSRLPQALLEEWSREGRLQLAA----N--TVALAGFTSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFN--------------------------------LDPSELEELLHYLVREGVLVKIND---EFYW-- | |||||||||||||
4 | 1xwyA | 0.18 | 0.15 | 5.04 | 0.61 | MUSTER | TSSQFAKDRDDAGVNLRESQQAQKLARQYSSCWSTAHPHDSSQWQAATEEAIIELAAQPEVVAIGECGFNRNFSTPEEQERAFVAQLRIAADLRDAHERFMTLLEPWLDKLPGA-CFTGTREEMQACVAHGI------------YIGI--TGWVCD--ERRGLELRELLPLI-----PAEKL----DAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGED-AAWLAATTDANVKTLFGIAF------- | |||||||||||||
5 | 1lvaA | 0.12 | 0.09 | 3.08 | 0.89 | CNFpred | --------------PEKILAQIIQEHR---EGLDWQEAATRASSLEETRKLLQSMAAAGQVTLLRVE--------NDLYAISTERYQAWWQA----VTRALEEFHSRYPLRPGLAR-RVYQALLEEWSREGRLQLA------ANTVALAGFTPFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSF--------------------------------NLDPSELEELLHYLVREGVLVKIN---DEFYWHR | |||||||||||||
6 | 2pffB | 0.15 | 0.14 | 4.79 | 0.68 | HHsearch-2 | -MDAYSTRPL--TLSHFFIASQL--QEQFNKILEPTEGFAADDEPTTP-AELVGKFLSSLVEPSKVGQFDQLLTEFENCYLEGNDIHALAAKLLQKTKELIKNYITAIPFDSNSANIKFSAETLSELIRTVFLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAYLKGATGHLVTAVAIAESWESFF-----VSVATVLF--FIGV---RCYEAYPNTSLPPSLENNEGVPSPMLSISNLTGAKNLVVS | |||||||||||||
7 | 2zcvA | 0.11 | 0.10 | 3.59 | 0.62 | Neff-PPAS | RNPAKAQALAAQGIDYGDEAALTSALQGVEKLLLIS--SSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLADEHIETEKMLADSGIVYLASAPAALEHGVFIGAAGDGKIASATRADYAAAAAVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGK---QVTYQNLSEADFAAALKSVLPDGLADMLADSDVGASKGGLFDDSKTLSKLIGTTLAESVSHLFN------------------ | |||||||||||||
8 | 1lvaA | 0.12 | 0.08 | 2.97 | 0.53 | HHsearch | ------------GSPEKILAQIIQEHR---EGLDWQEAATRASSLEETRKLLQSA-AAGQVTLLRVE--------NDLYAISTERYQAWWQAV----TRALEEFHSRYPLRPGLARSRLPQALLEEWSREGRLQLAA----N--TVALAGFPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFN-----------------------------L---DPSELEELLHYLVREGVLVKIND---EFYWH- | |||||||||||||
9 | 5l3zA | 0.14 | 0.12 | 4.19 | 0.80 | SP3 | RDLAAPGLPEGVEARPETLARALEVDK----VFL-------YTVPEGIAGFVDEARAAG-VRHVVLLSSIWPDADRDPIGRMHLAVERPIEESGEALATNALGWAPEIRGGDMVRCAYPGEEDIADVVVA--ALTTPGHRSAAYALTGPET----LTQAEQVALIGEALGRARCERMPEQEARAVLEGLYPAEVVDAILAGQA-ARDGRPAEVLDTIRAVTGRTFREWAGDHV-----AAFRPA-------- | |||||||||||||
10 | 4infA | 0.09 | 0.09 | 3.30 | 0.76 | PROSPECTOR2 | MTQDLKTGGEQGYLTADKGMVSLWGFYAQSPSERATQILERLLDLG--ERRIADMDATGIDKAILALTSPGVQPLHDLDEARTDTLADACQKYPQDPEWSAREIHRGARELSHTQGRYLDEEFFDPIFRPATSPDSMIDPMLEAGLDGAIFGFGVETGMHLLRLITIIFDKYPALPYWLYRLDYMH------------QAGVRSQRYERMKPLKKTIEGYLGVAWEPAIKFCQVADEVRAMDAMDMSAQTKL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |