>PF10460 (365 residues) DKTTRPATLRTQVTAPGNVRVNFWVEDAEFTAGNITQAMVDGLAAAFANSGGIYDKLVNI GGPVWGPNSYGGTMLPDGQPLDIVILNFNRDGQPFGTVGYFWSMHNFLKSSAQNSNEAIS LYLDSETLSLGGASGLQSVKTVMAHEGTHMQNFYRRQVSMGAAYAYDTWLEEMTAMQMED FQSHDIDPTYNPIRDLRLPDFYRYGAYNCNVLQFTGFGASCESYSVSGSLGGFLNRQLGL AFYKDLLTRATTGSKTVLDQAIRAAQPGWTFEQALLNWKVTTTAALPAASAPAGFGYPGR TDGVYVLPQIDPSLPAYAALRKLPAIAPIFLQGYGTYAAARSDSNGVYSDKVRVPAGAAL SVVVY |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DKTTRPATLRTQVTAPGNVRVNFWVEDAEFTAGNITQAMVDGLAAAFANSGGIYDKLVNIGGPVWGPNSYGGTMLPDGQPLDIVILNFNRDGQPFGTVGYFWSMHNFLKSSAQNSNEAISLYLDSETLSLGGASGLQSVKTVMAHEGTHMQNFYRRQVSMGAAYAYDTWLEEMTAMQMEDFQSHDIDPTYNPIRDLRLPDFYRYGAYNCNVLQFTGFGASCESYSVSGSLGGFLNRQLGLAFYKDLLTRATTGSKTVLDQAIRAAQPGWTFEQALLNWKVTTTAALPAASAPAGFGYPGRTDGVYVLPQIDPSLPAYAALRKLPAIAPIFLQGYGTYAAARSDSNGVYSDKVRVPAGAALSVVVY | |||||||||||||||||||
1 | 4ar1A1 | 0.12 | 0.08 | 2.99 | 1.32 | SPARKS-K | ------KYCPKTYTFDD-GKVIIKAG------ARVEEEKVKRLYWASKEVNSQFFRVYGI------DKPLEEGN--PDDILTMVIYNSSVLYGYDTNGGMYIE------------PEGTFFTYEREAQESTYT-----LEELFRHEYTHYLQGRYAVPGQWGRTDRLTWYEEGGAELFAGST----RTSGILPRKSIVSNIHNTTRYKLSTVHSKYGASF-EFYNYACMFMDYMYNKD-MGILNKLNDLAKNNDVDGYDNYIRDLSSN---HALNDKYQDHMQERIDNYENLTVPFVADDYLV-------------------------------------------------------------- | |||||||||||||
2 | 4ar1A1 | 0.15 | 0.10 | 3.25 | 1.64 | FFAS-3D | -----------KTYTFDDGKVIIKAGA------RVEEEKVKRLYWASKE---VNSQFFRVYGIDKPLEEG-----NPDDILTMVIYNSPEEGYDTNNGGMYIEPE------------GTFFTYEREAQESTYT-----LEELFRHEYTHYLQGRYAVPGQWGRTKRLTWYEEGGAELFAGSTRTSGILPRKSIVSNILSDTVH-----------SKYGASFEFYNYACMFMDYMYNKDM-GILNKLNDLAKNNDVDGYDNYIRDLSSNHALNDKYQDHRIDNYENLTVPFVADDY---------------------------------------------------------------------- | |||||||||||||
3 | 3se6A | 0.15 | 0.12 | 3.98 | 0.64 | HHpred | -------DFHSLGFTSSGVKVSIYASPDKRNQ---THYALQA-S---L---KLLDFYEKYFDIYY-----------PLSKLDLIAIP---D---------------FA--PGAMENWGLITYRETSLLFDPKASDKLWVTRVIAHELAHQW--FGNLVTMEW--WNDIWLNEGFAKYMELIAVNATYPELQFFLNVCFEVITKDSLSSRPISK-PAETFDEVSYNKGACILNMLKDFLGEEKFQKGIIQFSNAKNDDLWSSLSNSLGNAEVKEMMTTWTLQ-------K------GIPLLVGCSLRLQQERFLQ----GQERYLWHIPLTYSTSNVIHRHI--LKSK-TDTLDLPEKTSWVKF-- | |||||||||||||
4 | 4ar8A | 0.12 | 0.10 | 3.61 | 1.03 | MUSTER | DINKLIEEGKKKTYTFDNGKIIIKAG------DKVEESKIQKLYWASKE---VKSQFHRIIGNDKPLEV-----GNADDILTIVIYNNPEEYKLNKTL------YGYSVDNGGIGIGTFFTYER------TPQESIYSLEELFRHEFTHYLQGRYLIDFYKGNNGRITWFEEGSAEFFAGSTRTSVLPR-----KSMVGGLSKNPKERFNADKLSKYSDGWDFYKYGYAFSDYMYNNN-KKLFSDLVSTMKNNDVKGYEALIEESSKDSKINKDYEYHMENLVNNYDNYTIP-------LVSDDY------MKQYDNKSLHEIKSDIEKAMDVKSQITKESSQYFDTYNLKATYTNKGEISNWNY | |||||||||||||
5 | 4ar8A | 0.12 | 0.08 | 2.71 | 1.33 | CNFpred | ---------TYTFDN---GKIIIKAGDK------VEESKIQKLYWASKEV---KSQFHRIIGNDKPLEV------NADDILTIVIYNNPEEY-SVDNGGIYIEG------------IGTFFTYERTPQ-----ESIYSLEELFRHEFTHYLQGRYLIPGKGDFNGRITWFEEGSAEFFAGSTRT-----SVLPRKSMVGGLSKNPKERFNADKLLHSKDGWDFYKYGYAFSDYMYNNN-KKLFSDLVSTMKNNDVKGYEALIEESSK---DSKINKDYEYHMENLV------------------------------------------------------------------------------- | |||||||||||||
6 | 4ar1A1 | 0.14 | 0.10 | 3.28 | 1.60 | HHsearch-2 | --KYCPKT-----YTFDDGKVIIKAGRV-------EEEKVKRLYWASKE---VNSQFFRVYGIDKPL---E-EGN-PDDILTMVIYNSPEEYKLTNNGGMYIEP----------E-GTFFTYEREAQ---E---STYTLEELFRHEYTHYLQGRVPGWGRTKDNDRLTWYEEGGAELFAGSTRTSG---ILP--RKSIVSNIHNRNNRYKLSDSKYG-ASFEFYNYACMFMDYMYNKD-MGILNKLNDLAKNNDVDGYDNYI-RDLS-SN-HALNDKYQDH-MQER--IDN-----YE-----NLTVPFVADD---Y-------------LV--------------------------------- | |||||||||||||
7 | 4p8qA3 | 0.15 | 0.09 | 3.14 | 1.47 | Neff-PPAS | ---------KNLSQDVNGTLVSIYAVPEKIGQVHYALETTVKLLEFFQNYFE---------------------IQYPLKKLDLVAIP--------------------DFEAGAMENWGLLTFREETLLYDSSMADRKLVTKIIAHELAH--QWFGNLVTMKW--WNDLWLNEGFATFMEYFSLEKIFKELS--SYEDFLDARFKTSSSVQSSEQIEEMFDSLSYFKGSSLLLMLKTYLSEDVFQHAVVLYASIQSDDLWDSFNEVNQTLDVKRMMKTWTLQKG---------------------------------------------------------------------------------- | |||||||||||||
8 | 4ar1A1 | 0.14 | 0.10 | 3.28 | 2.10 | HHsearch | --KYCPK-----TYTFDDGKVIIKAGRV-------EEEKVKRLYWASKE---VNSQFFRVYGIPLEE------GN-PDDILTMVIYNSPEEYKLTNNGGMYIEP----------E-GTFFTYEREAQ---E---STYTLEELFRHEYTHYLQGRVPGWGRTKDNDRLTWYEEGGAELFAGSTRTSG---ILP-RKSIVSNIHNR-NNRYKLSDSKYG-ASFEFYNYACMFMDYMYNKD-MGILNKLNDLAK-NNVDGYDNYI-RDLS-SN-HALNDKYQDH-MQER--IDN-----YE-----NLTVPFVADD---Y-------------LV--------------------------------- | |||||||||||||
9 | 4ar8A | 0.11 | 0.10 | 3.47 | 1.62 | PROSPECTOR2 | DINKLIEEGKKKTYTFDNGKIIIKAGDK------VEESKIQKLYWASKE---VKSQFHRIIGNDKPLEV-----GNADDILTIVIYNNPEYGYSVDNGGIYIEGI------------GTFFTYE-----RTPQESIYSLEELFRHEFTHYLQGRNKGDFYKGNNGRITWFEEGSAEFFAGSTRTSVLPR-----KSMVGGLSKNPKERFNADKLLHSKDGWDFYKYGYAFSDYMYNNN-KKLFSDLVSTMKNNDVKGYEALIEESSKDSKINKDYEYHMENLV------NNYDNYTIPLVSDDYMKQYDNKSLHEIKSDIEKAMDVKNSQITKESSQYFDTYNLKATYTLNPRLNSNNEVVYDIN | |||||||||||||
10 | 4ar8A | 0.13 | 0.08 | 2.78 | 1.59 | SAM | --EEGKKHYLPKTYTFDNGKIIIKAGKVE-------ESKIQKLYWASKE---VKSQFHRIIGNDKPL---------ADDILTIVIYNNPEEYKSVDNGGIYIE-----------GIGTFFTYERTPQE--S----IYSLEELFRHEFTHYLQGRYLIPGFNKGNGRITWFEEGSAEFFAGSTRTSRKSMVG-----GLSKN-PKRFNADKLLHSKYS-DGWDFYKYGYAFSDYMYNNN-KKLFSDLVSTMK-NNDVK---GYEALIE--ESSKINKDYEYH-M---------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |