>PF10327 (302 residues) DVDFETPQFLVHHYYISGSISIIINTFVFYLLLFHKGKMDSFRYYMLAFQLTCSLCDIHL TFLMQPVTLFPMASGYCTGVLIKLIDVTPHFLMTILGFFVGYQVNVLNLCFLRKHQAIAK ISNKYVLSEKVYNAIVLFFMTYTFNYVIPFYLAHLTKEEEYQIIDRNYPKLRHKFETLSN FDIFEFNIMIQLSVAMIMAGCMQSTITVSVLAFQMYQVLMQCKLNLSKSTLEKHKSALKS LVGQFMTTPIAILPAMLIVSTLFFPFKGTQVFTWIMLMVMTTHSTINCFVVIFTVPEFRA FV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DVDFETPQFLVHHYYISGSISIIINTFVFYLLLFHKGKMDSFRYYMLAFQLTCSLCDIHLTFLMQPVTLFPMASGYCTGVLIKLIDVTPHFLMTILGFFVGYQVNVLNLCFLRKHQAIAKISNKYVLSEKVYNAIVLFFMTYTFNYVIPFYLAHLTKEEEYQIIDRNYPKLRHKFETLSNFDIFEFNIMIQLSVAMIMAGCMQSTITVSVLAFQMYQVLMQCKLNLSKSTLEKHKSALKSLVGQFMTTPIAILPAMLIVSTLFFPFKGTQVFTWIMLMVMTTHSTINCFVVIFTVPEFRAFV | |||||||||||||||||||
1 | 6me6A2 | 0.11 | 0.10 | 3.67 | 1.72 | SPARKS-K | ARPSWVAPALSAVLIVTTAVDVVGNLLVILSVLRN----RKLRNAGNLFLVSLALANLVVAFYPYPLILVAIFYDG-----WAFGEEHCKASAFVMGLSVIGSVWNITAIAIDRYLYICHSAYHRIYRRWH------TPLHICLIWLLTVVALLP------NFFVGSLEYDPRIY-----SCTFIQTASTQYTAAVVVIHFLLPIAVVSFCYLRIWVLVLQARLKPSD------LRSFLTMFVVFVIFAICFAPLNCIGLAVAINPQEMEGLFVTSYLLAYFNSCLNPIVYGLLDQNFRREY | |||||||||||||
2 | 6m9tA2 | 0.10 | 0.09 | 3.30 | 2.03 | FFAS-3D | --DCGS--VSVAFPITMLLTGFVGNALAMLLVSRSYRRRESFLLCIGWLALTDLVGQLLTT---------PVVIVVYLSEHIDPSGRLCTFFGLTMTVFGLSSLFIASAMAVERALAIRAPWYASHMKTRATRAVLLGVWLAVLAFALLPVLGVGQ----------------YTVQWPGTWCFISTNWGNLFFASAFAFLGLLALTVTFSCNLATIKALVSRGSWGRITTE------TAIQLMAIMCVLSVCWSPLLIMMLKMIFKQKECNFFLIAVRLASLNQILDPWVYLLLRKILGRPL | |||||||||||||
3 | 5uenA | 0.13 | 0.12 | 4.04 | 0.61 | HHpred | ----AFQAAYIGIEVLIALVSVPGNVLVIWAV-KVNQALRDATFCFI---VSLAVADVAVGALVIPLAILINI-GPQTYF---------HTCLMACPVLILTQSSILALLAIDRYLRVKIPLRYKVVTPRRAAVAIAGCWILSFVVGLTPMFGWNNLSAVERAWAAAGS------MGEP-VIKCEFSMEYMV--YFNFFVWVPPLLLMVLIYLEVFYLIRKQLADLARSTLQKELKIAKSLALILFLFALSWLPLHILNCITLFCCHKPSILTYIAIFLTHGNSAMNPIVYAFRIQKFRVTF | |||||||||||||
4 | 1gzmA | 0.13 | 0.13 | 4.33 | 1.36 | MUSTER | QYYLAEFSMLAAYMFLLIMLGFPINFLTLYVTVQH-KKLRT---PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV--FGPTG---CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSR------YIPEGMQCSCGIDYYTPH----EETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQSATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCM | |||||||||||||
5 | 3rkoC | 0.07 | 0.07 | 2.68 | 1.47 | CNFpred | ---------IDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNY-GVEYLLMLGFFIAFAVKMPVVPLH----GWLPDAHSQA----------------PTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTG---SQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIH | |||||||||||||
6 | 5zbhA | 0.11 | 0.10 | 3.61 | 0.80 | HHsearch-2 | DCHLPLIFTLALAYGAVIILGVSGNLALIIIILKQK-EMRVTNILIVNLS----FSDLLVAIMCLPFTFVYTLM----D---HWV-FGEAMCPFVQCVSITVSIWSLVLIAVERHQLIINPRGW-RPNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDE-------PFQNVTLDA-YKDKYVCFDQSDHRLSYTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIFEGKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQNHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDL | |||||||||||||
7 | 3dqbA | 0.12 | 0.11 | 3.97 | 1.63 | Neff-PPAS | -AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV---------FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSR----------YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQSATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCM | |||||||||||||
8 | 5zbhA | 0.11 | 0.10 | 3.70 | 1.26 | HHsearch | DCHLPLIFTLALAYGAVIILGVSGNLALIIIILKQK-EMRNTNILIVNLS----FSDLLVAIMCLPFTFVYTLDHWVFGEA------MCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPRGW-RPNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDE-------PFQNVTLD-AYKDKYVCFDQSDHRLSYTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIFEGKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQNHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRD- | |||||||||||||
9 | 3c9lA | 0.14 | 0.13 | 4.42 | 1.51 | PROSPECTOR2 | QYYLAEPWQFSMLAAYMFLLGFPINFLTLYVTVQHKKLRTPLNYILLNL----AVADLFMVFGGFTTTLYTSLHGYFVFGPTG-----CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSR----------YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCM | |||||||||||||
10 | 6e59A | 0.11 | 0.10 | 3.58 | 1.52 | SAM | --------LWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAA----FNTVVNFTYAHNEW------YYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQP-RLSATATKVVICVIWVLALLLAFPQGYYSTTETMP-----SRVVCMIEWPEHP-------NKIYKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEG-SFSEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |