Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | GPFYLMKEPPSECGVTGATNLMSYNNLEHSYSKYSGKKVKEQLSSFLPNLPGVIDGPGQQDGSSLRSVIDKPPIVGKELLSLTSVQLAGFRLHPGPLPEHYRYLNTAPAKKHKNKHKKHKHKDGVAPQESVVDATGLDTHEKKHKKQKRHEDDKERKKRKKEKKRKKQRHSPEHPG |
1 | 1vw48 | 0.11 | 0.10 | 3.51 | 1.06 | SPARKS-K | | LELIPENFIGEGSRRCKRQKELKLAVSSAPFNQWLSRDKSNQLDDMILQATEKTLGKVDQDVQFTKFLQSKSGYL------IPDYELTTLST-----PLQFKRYPSANDPKLAYKEAEPNAIHPFSPNIYVVNDVTSKEQKSKYDTIMKEIQKLEDDATRKALETARSA------- |
2 | 5n9jC | 0.15 | 0.09 | 2.88 | 1.47 | HHpred | | PEYHYVGSDYQPTRPSAHQNLIELYGLTELAKKVGRRKMRRSYKAYIQDLPGYNEILR--D-NTIKQWLTNPIREE---VPIDIEFLHVFSVEPGIIPGFNPKVFGLE-------------------------------------------------------------------- |
3 | 5n9jC | 0.15 | 0.09 | 2.88 | 2.59 | HHsearch-2 | | PEYHYVGSDYQPTRPSAHQNLIELYGLTELAKKVGRVKMRRSYKAYIQDLPGYNEILR--D-NTIKQWLTNPIREE---VPIDIEFLHVFSVEPGIIPGFNPKVFGLE-------------------------------------------------------------------- |
4 | 6eunA | 0.08 | 0.06 | 2.47 | 1.13 | Neff-PPAS | | -----------------------------------DDVKKAATVAIAAAYNNGQEINGFKAGETIYDIDEDGTITKKDAT---AADVEADDFKGLGLKKVVTNLTKTVNENKQNVDAKVKAAESEIEKLTTKLADTDAALADTDAALDATTNALNKLGENITTFAEETKTNIVKID |
5 | 5n9jC | 0.14 | 0.08 | 2.73 | 3.02 | HHsearch | | PEYHYVGSDYQPTRPSAHQNLIELYGLTELAKKVGRVKMRRSYKAYIQDLPGYNEILR-D--NTIKQWLTNPIREE---VPIDIEFLHVFSVEPGIIPGFNPKVFGLE-------------------------------------------------------------------- |
6 | 1vw4b | 0.14 | 0.11 | 3.88 | 1.04 | SPARKS-K | | -------------------------------YKQYFDSLPLKLKSFFSIKYSPVSTSTKAINANPFLPNKHPVTQRFHDPKYSSDVYKLALRYEEFLP-PIENTKKLFFEEKYNKKTLMKGVLL--PKGHKHELKLNEKLKKREEALKKVDELIASKKGSKYAKRVEKMKKNQSIG |
7 | 5oqmm | 0.11 | 0.06 | 2.05 | 1.39 | HHsearch-2 | | -YYYYVDTTYTYQQPNPLQDLISVYGLDDISRQVARVKLRKSYKNQIADLSGKFSTIS--E-QQWREQLQPPNFD--------WDLCVLSQFERS-YPSEFANQ------------------------------------------------------------------------ |
8 | 5lsjA | 0.11 | 0.10 | 3.72 | 1.03 | Neff-PPAS | | ------DPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPD--CDISPVQIRKCTEKKGHFDNLFSKMEQLFLQLLRIPSNILLPEDKCKETPYSEEDFQHLQKEIEQLQEKYKTELCTKQALLAELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRES |
9 | 5oqmm | 0.11 | 0.06 | 2.05 | 1.61 | HHsearch | | -YYYYVDTTYTYQQPNPLQDLISVYGLDDISRQVARTKLRKSYKNQIADLSGKFSTIS--E-QQWREQLQPPNFD--------WDLCSLSQFERS-YPSEFANQ------------------------------------------------------------------------ |
10 | 1w9rA | 0.12 | 0.08 | 2.80 | 1.02 | Neff-PPAS | | --------------------------------------------------------GSHMPEKKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKP------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|