>PF10261 (245 residues) PSYFARKDNLVNVLFVKRGWAWVSAAFAAFVLTHPHHTKNTTTGRGGGQQGGSSSRRLRA VLRWALVTGWWVLVTQWCFGPPLIDRGFRYTGGKCEEAEQKVRGADNYAASPVDIFSAAA CRTAGGRWRGGHDISGHVFLLVLGSFFLLQEAGWVAVRAWEGASGGGGRRDSRAVVMPDG AVKGVDVEADGRREDPSELGFGGRFVAGVVGLSMWMLLMTAIYFHTWFEKLTGLLVALIG LYGVY |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | PSYFARKDNLVNVLFVKRGWAWVSAAFAAFVLTHPHHTKNTTTGRGGGQQGGSSSRRLRAVLRWALVTGWWVLVTQWCFGPPLIDRGFRYTGGKCEEAEQKVRGADNYAASPVDIFSAAACRTAGGRWRGGHDISGHVFLLVLGSFFLLQEAGWVAVRAWEGASGGGGRRDSRAVVMPDGAVKGVDVEADGRREDPSELGFGGRFVAGVVGLSMWMLLMTAIYFHTWFEKLTGLLVALIGLYGVY | |||||||||||||||||||
1 | 3rkoB | 0.14 | 0.08 | 2.77 | 1.21 | CNFpred | ------------------LMWATLMLLGGAVGKSAQLP---------------QTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT---------------------------------------PEVLHLVGIVGAVTLLLAGFAALVQT----------------------------------DIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVIL | |||||||||||||
2 | 5y78A | 0.05 | 0.05 | 2.29 | 1.08 | Neff-PPAS | --------NIANKRTLNMWKYPWVLSTIQLGVGALYCTFLWVLGLRT-KPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVFGAVGSALVLGEFFHPLTYLTLVPIVSGVALSAATELTFTWTGFITAMISNVAFVTRNITSKFTMVDFKNEKTLIAQNTYALPFALLMEGFPPLVSAIAGVSKAKLFGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFG | |||||||||||||
3 | 5y78A | 0.07 | 0.06 | 2.54 | 0.91 | SPARKS-K | WYFFNFIFNIANKRTLNMPWVLSTIQLGVGALYCTFLWVLGLRTKPNVSKKKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVFGAVGSAVLGEFFHPLATELTFTWTITSKFTMVDFKNEKTLI--------AQNTYALITIISFFMELPFALLMEGFPPLVS-------------------AIAGVSKAKLFGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFGSI | |||||||||||||
4 | 5jkiA | 0.15 | 0.09 | 3.15 | 0.72 | FFAS-3D | ----LIRQPWLNEVMTHLGASSFLLPLIVIIGAGMFFYRKTW-----------------DGLLMLLVFGTDRLLNK------VLKEWI------------ERVRPDFAPLVHESSFS---------------FPSGHSMNAACVYPVIAYFLVKHLPFL---------------------------------SKHKKMVYIIAGVIAVLVGI-------SRVYLHFVTDVLGGFSLGLLLFFLVK | |||||||||||||
5 | 5jkiA | 0.12 | 0.08 | 2.71 | 0.32 | HHpred | -------------------YKPV-SLFLFFLILAAAIHTNADEAKAVLIRQPWLNEVMTGITLMLLVFGTDRLLNKV------LKEWI----ERVRPDFA-------------PL---------VHESSFS-FPSGHSMNAACVYPVIAYFLVKHLP-------------FL-S-------------------KHKK-------MVYIIAGVIAVLVGISRVYVHFVTDVLGGFSLGLLLFFLVK | |||||||||||||
6 | 3wajA1 | 0.10 | 0.10 | 3.58 | 0.93 | MUSTER | PGQFLQRSILGFNDHHIWEAFWQVSALGTFLLAY-------NRWKGHDLTARQMAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLA-----GFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGRKGMPLAVIVLTALIMGLFFVLTNAVLHFGALFFFGMAGILYSAYRFL---RRSFPEMALLIWAIAMFIALW | |||||||||||||
7 | 4j05A | 0.18 | 0.11 | 3.71 | 1.19 | CNFpred | ---------FRNLLGSMLGWFLVDIAFYGINLNQSVVLAQ----IGFAGKTGDVYDKLFQLATGNIIVTALGFLPGYYFTLFLIDIV------------------------------------------------GRKKLQFMGFIMSGLFLAILAGEIDHIG------------------------------KGPLLACFTFMQFFFNFGANTTTFIVAAELFPTRIRASAHGISAAAGKCGAI | |||||||||||||
8 | 2pffB | 0.11 | 0.09 | 3.25 | 0.40 | HHsearch-2 | EGFAADDEPTTPAELVGKFLGYV----------SSLVEPSKFDQNYALAADTTLVKTKELIKNYITAR--------IM-----AKRPFDKK--S--NSALFRAVGE-GNAQLVAIF--------GGQG-NTDDYFEELRDVGDLIKFSAETLSELIRTTLDAEKV---FTQGLN-ILE-W-LENPSNTPDKDYLLSIPISCPLIGVIQLLELRSGLVTAVAIATDSWESFFVSVRKAITVLFFAY | |||||||||||||
9 | 6d26A1 | 0.07 | 0.07 | 2.82 | 0.92 | Neff-PPAS | ------RQTVVTTWVLHLALSDLLASASLPFFTYFLAVGHSWELGTTFVRPVWAQNHRTVAAAHKVCLVLWALAVLNTVPYFVFRDTISRLDGMCYYNVLLLNPGPDRDATCNSRQAALAVSKFLLAF-------LVPLAIIASSHAAVSLRLQHRADLGLQHRNIFEMLRIDEGGGSGGDEAEKLFNQYRRRPGRFVRLVAAVVAAFALCWGPYHVFSLLEARAHANPGLRPLVWRGLPFVTSL | |||||||||||||
10 | 5iv5E1 | 0.14 | 0.06 | 1.94 | 0.73 | HHsearch | -----------------RDWG-----------DTRYPDPYTFINDVCNSAPYNATESG----------AGWL----------VYRCLDVPDTGMCSIAS---------------LTDKDECLKLGGKWTPSARSM----------------TP-------P---------EGRG--DAEGTIEPG---DGYVWELFEI----------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |