>PF10239 (316 residues) LDSLEALGYTGPLLDEQALLKATENGVSSQEFTELCAWLASQIKLLCNLEETVTPITGED DIENFQIEVSGFLKEMSCPYSTLITGDVKDRLKKKEDCLKLLLYLSSELQARQIFLSKRS PGLAAKGLNETYQDLKSICSTLDLPQPIVSDIPQLFNNIETKVKAILSQVPKDHVGKPLF KVTLGPDQWEKLNSINSALAMEYKCRRRMLIKRLDVTVQSFGWSERAKVQTDTMAKVYQP KRYTLSLNSTITLAHLLSAREDVSKIIKTSSGSSRENTVCAVNKVLMGRVPDRGGRPSEI EAPPPEMPPWQKRQEG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LDSLEALGYTGPLLDEQALLKATENGVSSQEFTELCAWLASQIKLLCNLEETVTPITGEDDIENFQIEVSGFLKEMSCPYSTLITGDVKDRLKKKEDCLKLLLYLSSELQARQIFLSKRSPGLAAKGLNETYQDLKSICSTLDLPQPIVSDIPQLFNNIETKVKAILSQVPKDHVGKPLFKVTLGPDQWEKLNSINSALAMEYKCRRRMLIKRLDVTVQSFGWSERAKVQTDTMAKVYQPKRYTLSLNSTITLAHLLSAREDVSKIIKTSSGSSRENTVCAVNKVLMGRVPDRGGRPSEIEAPPPEMPPWQKRQEG | |||||||||||||||||||
1 | 2x0cA | 0.08 | 0.07 | 2.66 | 0.72 | SPARKS-K | ------------------------IDPFTKHGQKECDNALRQLETVRELLENPVQPINDMSYFGCLDSVMENSKVLGEAMTGISNGNLPEFGDAATASKALCGFTEAAAQAAYLVGVSDPNSQAGQQGARANQAIQMACQSLGEPGCTQAQVLSAATIVAKHTSALCNSCRLARTA--------NPTAKRQFVQSAKEVANSTANLVKTIKALDG------DFTAQCRAATAPLLEAVDNLSAFASNSVPAQISPIVISAKTMLESAGGTARALAVNPRDPPRWSVLAGHSRTVSDSIKKLITSMRDKAPGQL--- | |||||||||||||
2 | 3i9yA | 0.11 | 0.08 | 2.84 | 0.99 | FFAS-3D | MIEARQVS--ELSTRIISSVQMLSNAQNEQERKEAGRVLFEQLESL---LTHIKELGGESFDSKLLDALESNVQNVINNLAELGV-TVERKLWLAKEIDTRVEEMRLLSEELEQLTRTLDLTERLHELHLLAFKMLNQIEEARTLTNVDRQIQTAFENNLKIMKRRVLAVE-------------DPTRSKQMSQLLTELGKRFTILL----QQYENNEQS----QQLMQKTLELFSELNSTVNKLVDDS------------------------------------------------------------------- | |||||||||||||
3 | 2pffB | 0.14 | 0.13 | 4.42 | 0.46 | HHpred | HGSLEHV-LLVQLQ--EQFNKILPEGFADDEPTTPA-ELVGFLGYVSSL-------VEPSKVGQFDQVLNLCLTEFENCYLEGNDIALAALLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNGNTDDYFEELRDLYQTYHV------LVGDLIKFSAETLSELIRTTLDEWLENPSNTDLLSPISCPLIGVIQLAHYVVTA---KLLLSYLLVTAVADSWESFFVSVRKAITVLFFIGVRCYEAYPPPSILDSLENNEPMLSISNLTQE-QVQPAGKQVNLTLRKKAPS---GLDQSRIPFSEKLKFSNRF-- | |||||||||||||
4 | 1st6A | 0.11 | 0.10 | 3.70 | 0.70 | MUSTER | LEYLTVA----VVETMEDLVTYTKN-LTHQEHRVMLVNSMNTVKELLPV--FVTKNTKSQGIEEALKNRNFTVEKMSAEINEIIRDEDAWASKDTEAMKRALALIDSKMNQAKGWLR-DPNAPPGDAGEQAIRQILDEAGKAGELCAGKREILGTCKTLGQMTDQLADLRARGQGATPMA-MQKAQQVSQGLDLLTAKVENAARKLEAMTNSKQAIAKKIDAAQSEGEEHIRGIMSEARKVAEL-CEEPKERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQI--ATSLQNLQSKTNRAVANTRPVKAA | |||||||||||||
5 | 4haxC | 0.11 | 0.08 | 2.95 | 0.75 | CNFpred | LVYLTHLNVIDEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTM----------SEDTEKRFVVTVIKDLLDLC-----------VKKRGKDNKAVVASDIMYVVGQYPRFLKAH---------WNFLRTVILALFEFMHETHEGVDMACDTFIKIVQKCKYHFVIQQPRES-EPFIQ-----TIIRDIQKTTADLQPQQ---VHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSSETVKIIANIIKTNVAVCTS----------------------------------------------- | |||||||||||||
6 | 2pffB | 0.14 | 0.13 | 4.44 | 0.72 | HHsearch-2 | HGSLEHVLLVSQLQ--EQFNKILPEGFADDEPTTPA-ELVGKLGYVSSL-------VEPSKVGQFDQVLNLCLTEFENCYLEGNDIALAALLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNGNTDDYFEELRDLYQTYHV------LVGDLIKFSAETLSELIRTTLDEWLENPSNTDLLSIISCPLIGVIQLAHYVVTA---KLLRSYLLVTAVTDSWESFFVSVRKAITVLFFIGVRCYEAYPPPSILDSLENNESISNLNKTNSLTLRKKAPSGLDQSRI-PFSERKLKFSNRFL-PVASPFHSHLLVQ | |||||||||||||
7 | 2yfaA | 0.08 | 0.06 | 2.37 | 0.80 | Neff-PPAS | -----------------------------GSHMGDIGQLNKDLTDLRIARLQMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRA-ARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVR---IDVRGYIAEN-SSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTS-RAEMTVQGADIVKRSDALYQIQLER---------------------------------------------- | |||||||||||||
8 | 4l3iA | 0.13 | 0.10 | 3.60 | 0.53 | HHsearch | ---------------------------------RRSEVLAEES---------------IVCLQKALNHLREIWELIGIPEDQR------------LQRTEVVKKHIKELLD--IAEEESLKERLIKSISVCQKELNTLCSELHVEPFQEETILQLEKDLRTQDQELCEIL-----CPHIDSSVPSLEELNQFRQHVTTLRETKASRREEFVSELDHTPDAFCLSLELE-QKSQNEAVCEGLREAVATISGSKAKVRKALQLEVDRLEELKQNKKVEAIRVELDQCFYSFAPCAEDYTESLLQLDAELPKWEQEHS- | |||||||||||||
9 | 5cwpA | 0.12 | 0.08 | 2.93 | 0.66 | SP3 | EEEARELIERAKEAAERAQEAAERTG--DPRVRELARELKRLAQEAA---EEVKRDPSSSDVNEALKLIVEAIEAA---VRAL---EAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAERTGDPEVRELARELVRLAVEAAEEVQRN---------PSSEEVNEALKKIVKAIQEAVESLREAEESG----------DPEKREKARERVREAVERAEEVQRDPSGWLE-------------------------------------------------------------- | |||||||||||||
10 | 5j65A | 0.10 | 0.09 | 3.48 | 0.93 | PROSPECTOR2 | HSLIHTIKYGPGDVNEQQLRTHVQDISIPSDFSQLIIKSANDIASYGFKVAGDPSIDG------YFKKLQDELDNIVDN-----NSDDDAIAKAIKDFKARCGILIKEAKVTSLDQFLHGDQKKLEGVINIQKRLKEVQTALNQAHGESSPAHKELKNLKTTLERTIKAEQDLEKKVEYSFLLGPNTAVQHIKNQIDEIKKQLDDRDVKIIGMLNSINTDIDNLYSQGQEGAQIENLRTTSLQEVQDSDDADQIELEDASDAWLVVAQEARDFTLNA--------------YSTSNLEYKCPENNFMSDWYNNSDW | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |