Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | TGVVCIVLCFALGIANIFSFNAVRIIFSVLCLVSSFILIFIEVPFLLRICPTSSKFDEFIRRFTTNWMRAAMYTIMSVVQWLSLLSGASSLIAAAVFLILAALFYALAGLKSQ |
1 | 3jbrE | 0.16 | 0.16 | 5.29 | 1.12 | SPARKS-K | | VTLFCILVGIVLAMTAVVSFTTQKEYSISAAAISVFSLGFLIMGTICALMFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMIYYYCAAFVLLFLGGISLLLFSLPR- |
2 | 6mjpF1 | 0.07 | 0.07 | 2.88 | 1.02 | SP3 | | IKSQFAIFFVLFLVFLSQKIRVLADMILSIVGLNMPAMGLLMLPLSLYI----GILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLAPWSQDKEAH |
3 | 4tkrA | 0.10 | 0.10 | 3.63 | 0.96 | SPARKS-K | | FAAVAMVLMIPMYVIAIRRGFWAAGFAGLLWGLLHFLTYILAFSFIAFSGVFSKQVRSNLAKAIEWAWGTMIIGGVARYFWHYVAGVLFSIVMNGASCLGTVLVSGIIISILL |
4 | 4xtlA | 0.12 | 0.12 | 4.06 | 0.80 | FFAS-3D | | --WFSGAMMIITGYIGQFYEVAFLVWGAISSAFFFHILWVMKKVINEGKEGISPAGQKILSNI--WILFLISWTLYPGAYLMPYLTGVDGFLYSEDGVMARQLVYTIADVSS- |
5 | 1zcdA1 | 0.15 | 0.08 | 2.70 | 0.25 | HHpred | | ------------------DLSMASLGVAAVAIAV--L--------------------AVLNLC--GARRTGVYILVGVVLWTAVLK-------SGVHATLAGVIVGFFIPL-- |
6 | 4q2eA1 | 0.12 | 0.12 | 4.08 | 0.92 | MUSTER | | ---ITASVVAPFVVLCFVSYESLIGLVSAILILAGYELITLRDARFFYVILLALYPVLYGLVFEEPTQPLSILFITGVVFSLITDKDAAFSIALIYVTFFLSFFLPIYRDFGA |
7 | 3rkoC | 0.12 | 0.12 | 4.10 | 0.95 | CNFpred | | EYLLMLGFFIAFAVKMPV-TAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFIAMWLGVIGIFTDIKRLIAYTSVSHMGFVLIAIYTGAYQGAVIQMIAHGLSAAGLFILCG |
8 | 5oonA | 0.14 | 0.14 | 4.81 | 0.48 | HHsearch-2 | | --MHSLLIAAILGVVEGLTVSSTGIVGHLLGFAKTFEVVIQLGSILAVVVMFWRRLFGLIGIHESKGRLTLIHILLGMIPVLGLLFHLFNPINVMYALVVGGLLLIAACLKPK |
9 | 3o7pA2 | 0.05 | 0.05 | 2.42 | 0.83 | Neff-PPAS | | PHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFRSQT- |
10 | 1kvdA | 0.17 | 0.06 | 2.04 | 0.39 | HHsearch | | AATFGG---LAGGI-------VGCIAAGILAILQGFEVN---------------------------WHNGGGG------------DRSNPV---------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|