Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | DVVIVITGNPGVPDFYKDFAEQLQAKLPSEVPIWIIGHTGHTKPPDNLPNSYPDTKSARHLYDLKGNLKHKIEFIKQYVPADARIHIIAHSIGSWFTINLLRETEIADRVVKCYLLFPTIERMAESPTGRFLTGIVLRIAAVIIFLSWIFTLLPYLLQAVLIRVFGLFYGIPAHQTGAVLQLVHPIPLKRIFLLAKDEMILVKELDDNLISQHKGKLFLYYGANDGWTPIRYYEDLKAKFPDIDAHLCRRGFQHSFV |
1 | 1a8sA | 0.11 | 0.11 | 3.75 | 1.55 | SPARKS-K | | QPIVFSHGWPLNADSWESQMIFLAAQ---GYRVIAHDRRGHGRSSQ-----------PWSGNDMDTYADDLAQLIEHL--DLRDAVLFGFSTGGGEVARYIGRHGT-ARVAKAGLISAVPPLMLKTEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAA-GHKNAYDCIKAFSETD--FTEDLKKIDVPTLVVHGDADQVVPIEAGIASAALVKGSTLKIYS-GAPHGLT |
2 | 4lxgA | 0.14 | 0.12 | 4.14 | 1.84 | FFAS-3D | | DPLVLVHGGGAGADGRSNFADNF-PIFARHMRVIAYDMVGFGQT--------DAPDPAGFAYTQAARTDHLISFIKAL--GLSKICLIGNSMGGTTACGAALKA--PELIDRLVLMGAAVNISPDDMVADDLAAVM-------------SYDGSEEGMRKIIAALTHSYQPTDDIVHYRHEASRPTTTAAYKATMGWAKQNGLYYSPEQLASLTMPVLVLGGKNDVMVPVRKVIDQILAIPQAIGHVF-PNCGHW-- |
3 | 3hi4A | 0.12 | 0.11 | 3.71 | 1.01 | HHpred | | KPVLFSHGWPLDADMWEYQMEYLSSR---GYRTIAFDRRGFGRSDQ-----------PWTGNDYDTFADDIAQLIEHLDL--KEVTLVGFSMGGGDVARYIARHS--ARVAGLVLLGAVTPLKPDYPQGVPLDVFARFKT-------ELLKDRAQFISDFN-APFYGIQVVSQGVQTQTLQLASLKATVDCVT----AFA--ETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAELIKGAELKVYK-DAPHGFA |
4 | 1a8sA | 0.12 | 0.11 | 3.96 | 1.49 | MUSTER | | QPIVFSHGWPLNADSWESQMIFLAAQ---GYRVIAHDRRGHGRSSQPWSG-----------NDMDTYADDLAQLIEHLDLR--DAVLFGFSTGGGEVARYIGRH-GTARVAKAGLISAVPPLMLKTEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSET---DFTEDLKKIDVPTLVVHGDADQVVPIEAGIASAALVKGSTLKIY-SGAPHGLT |
5 | 4uhcA | 0.11 | 0.10 | 3.61 | 1.48 | CNFpred | | LPVLLVHGFPLDRTMWKAQREELC----DEFRVIVPDLRGFGESQVIP-----------GVATMEAMADDLAGLCNHLGL-TGKIVLGGLSMGGYVAFAFARKYR--DRLAGLILCDTRARPDS----PEAKENRRRVAERVRREG--PGFIAEEMIPRLCCESTFRN---HPEVIEKIRQMILS-APPEGVAAAALGMAERPD-STDLLPALSCPTLVLVGQFDAISPPEEMEAMARTIPQSQFVVIP-DAGHLPP |
6 | 1zd4A | 0.09 | 0.08 | 3.12 | 0.48 | HHsearch-2 | | PAVCLCHGFPESWYSWRYQIPALAQA---GYRVLAMDMKGYGESSAP---------PEIEEYCMEVLCKEMVTFLDKLG--LSQAVFIGHDWGGMLVWYMALFYP--ERVRAVASLNTPFIPANPNMPLESIKPVFDYQLYFPGVAEAELE---QNLSRT-FKSLFRARMVTEEEIQFYVQFKKS-GFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIPHLKRGHI-EDCGHWTQ |
7 | 1a8sA | 0.12 | 0.11 | 3.96 | 1.52 | Neff-PPAS | | QPIVFSHGWPLNADSWESQMIFLAAQ---GYRVIAHDRRGHGRSSQP-----------WSGNDMDTYADDLAQLIEHL--DLRDAVLFGFSTGGGEVARYIGRHG-TARVAKAGLISAVPPLMLKTEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSET---DFTEDLKKIDVPTLVVHGDADQVVPIEAGIASAALVKGSTLKIYS-GAPHGLT |
8 | 1ehyA | 0.11 | 0.09 | 3.41 | 0.73 | HHsearch | | PTLLLLHGWPGFWWEWSKVIGPLAE----HYDVIVPDLRGFGDSEKP---------DLLSKYSLDKAADDQAALLDALG--IEKAYVVGHDFAAIVLHKFIRKYS--DRVIKAAIFDPIQPDF-ESWYS----QFHQ-LD-M---AVEVVGSSRKKYFKHFFDHWSRDELLTEEELEVHVDCMKPDNIHGGFNYYRANIRPDAAWTDLDHTMSDLPVTMIWGLGDTCVPYALIEFVPKYYSNYTMETI-EDCGHFL- |
9 | 1a8q | 0.12 | 0.11 | 3.86 | 1.96 | PROSPECTOR2 | | RPVVFIHGWPLNGDAWQDQLKAVVD---AGYRGIAHDRRGHGHSTP-----------VWDGYDFDTFADDLNDLLTDLD--LRDVTLVAHSMGGGELARYVGRHGT-GRLRSAVLLSAIPPVMIKSDKNPDGVP-DEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGY---TDFTEDLKKFDIPTLVVHGDDDQVVPIDAGRKSAQIIPNAELKVY-EGSSHGIA |
10 | 1zd4A | 0.10 | 0.09 | 3.33 | 2.44 | SAM | | -AVCLCHGFPESWYSWRYQIPALAQA---GYRVLAMDMKGYGESSA----------PEIEEYCMEVLCKEMVTFLDKLG--LSQAVFIGHDWGGMLVWYMALFYP--ERVRAVASLNTPFIPANPNMPLESIKAVFDYQFQEPGVAEAELEQNLSRTFKSLFRASDLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIPHLKRGHI-EDCGH--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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