Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | RVIQTLKRDLPTLFEKDISYDIYTQDIYFQDPVNKFKGKLNYRIIFWTLRFHAQLFFTKIYFDLHDVNQSAENTILAKWTVRGVLRVPWKAKIFFNGYSTYKLNKDGLIYEH |
1 | 1tuhA | 0.10 | 0.10 | 3.59 | 1.86 | SPARKS-K | | QNAETVRRGYAAFNSGDTLTELFDENASWHTPAGDHKGREAIFAQFGRYGGETG---GTFKAVLLHVLKSDDGRVIGIHRNTAERG---GKRLDVGCCIVFEFKN-GRVIDG |
2 | 3ec9A | 0.10 | 0.09 | 3.35 | 1.42 | FFAS-3D | | TPYQIVADHYAASDRHDPAAADIAPAIEWTEAAGTYRSADEIVR---NVFRRLGEEWDGYTFKLDALHDAGD-TVIGVGRYSGTYR-RTGKSFECRVAHVWRV-DAGKIVH- |
3 | 2geyA | 0.13 | 0.12 | 4.31 | 1.02 | HHpred | | AERKALCLEMVAAWNWDLIIKHWSPDIVHYSEDN-EVSSADMVKLMEGGL--KA--FPDLQLEVKSIMA-EEDRVALRITVTATHQGPTGQRVSWHLVEELRFV-DGKVVEH |
4 | 5aifA | 0.14 | 0.13 | 4.55 | 1.95 | MUSTER | | TPIETVTAFIAHWNSGDMEYDLCAEDVVWHNIPMPIAGKPAMRAAVEGFMA----NVSQCDWQVHAIAAN-GATVLTERTDGFTF--TNGRRATIRVMGTFECDAERRIIAW |
5 | 2imjA | 0.10 | 0.09 | 3.35 | 1.81 | CNFpred | | SAIEKIRLAEDGWNSRDPVSLAYTLDTQWRNRAEFAHNREEAKAFLTRKWAK----ELDYRLIKEL-WAFTDNRIAVRYAYEWHDD--SGNWFRSYGNENWEFDEQGLMARR |
6 | 2imjA | 0.10 | 0.10 | 3.59 | 0.86 | HHsearch-2 | | ESAIEKIRLAEDGWNRDPVSLAYTLDTQWRNRAEFAHNREEAKAFLTRKW--AK--ELDYRLIKELWAF-TDNRIAVRYAYEWHD--DSGNWFRSYGNENWEFDEQGLARRF |
7 | 5aifA | 0.14 | 0.13 | 4.55 | 1.89 | Neff-PPAS | | TPIETVTAFIAHWNSGDMEYDLCAEDVVWHNIPMPIAGKPAMRAAVEGFMA----NVSQCDWQVHAIAANG-ATVLTERTDGFTFT--NGRRATIRVMGTFECDAERRIIAW |
8 | 2imjA | 0.11 | 0.10 | 3.58 | 1.40 | HHsearch | | ESAIEKIRLAEDGWNRDPVSLAYTLDTQWRNRAEFAHNREEAKAFLTRKW--AK--ELDYRLIKELWAF-TDNRIAVRYAYEWHD--DSGNWFRSYGNENWEFDEQGLARR- |
9 | 5aifA | 0.12 | 0.12 | 4.07 | 1.04 | PROSPECTOR2 | | MTPIETVTAFIAHWNSGAMYDLCAEDVVWHIPMEPIAGKPAMRAAVEGF----MANVSQCDWQVHAIAA-NGATVLTERTDGFTF--TNGRRATIRVMGTFECDAERRIIAW |
10 | 3f9sA | 0.17 | 0.15 | 5.01 | 1.06 | SAM | | --AKEILTQFTRVWSGNASDKYIAPKYTVHDPGDPWEGVAGYKERVKTLR--AA--FPDQCFDIQGLFA-DGDAV-VTWLWTATHKESTGKQIK-SGATVYYFD-GNRLTGH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|