Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | LATLQTSFNALFTSGLGMAEPQSDKIATTVPSSTAQNEYGWLGKLPSMREWLGDRVVNGVQAHGYAIKNRDFEQTIGVDRNDIEDDNLGIYNPLFTEMGRSTTAHREELVFALLAAGFTTPCYDGQNFFDTDHPVIDENGEEVSVSNMQAGAGTPWFLIDDTRALKPIIFQDRKPPQFVAKDSPTDDNVFSRKEFLYGVDCRRNVGFGFWQFAFGSKDTLDAANYAAARASMMGLKGDHGRPLGIRPTLLVVPPSLESAALKLLNNDRAANGETNEWKDTAKLIVVPWL |
1 | 3j4uA | 0.10 | 0.09 | 3.36 | 0.94 | SPARKS-K | | ARMTPDGKIDPQIVEMLNETNEILDDMTVIEANGTEHKTTVRSGLPT-GTWRKLVQPEKSRTVQVKDSMGMLETYAEVDKALADLNNSAWRLSEDRAFIEGMNQTQATTLFY------------GDSKFMGLTPRFNSLSAENIIDAGGTGSDNAWLTVWGPNTL-HTIYPKGSQAGL-QSRDLGEDTLIDYQGYRTHYKWDIGLTLRDWRYVVRDVSELTKNLIDLMTQAVELIPNVGMGR-----PAFYMPRKIRSFLRRQITNKVAAGKKVVAFDG-IPCRRTDAL |
2 | 6b0xA | 0.08 | 0.05 | 2.07 | 0.69 | FFAS-3D | | --TLMNEFTTPILQEVMEN-SKIMQLGKYEPMEGTEKKFTFWADKPGVGE-GQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQFFEEMKPMIAEAFYKKFDE------------------AGILNQGNNPFGKSIAQSIEKTNK----------------------------------------------------------------VIKGDFTQDNIIDLEALLED--------DELEANAFISKTQNRSLLRKIVTKERIYDRNSDSLDG-LPVVNLK-- |
3 | 5tjtA | 0.13 | 0.09 | 3.00 | 0.43 | HHpred | | -----------IIRDLQ-KELVVGALFEELPMSSKILTMLVEPDAGK-ATWVAASEEVKGALKEIHFSTYKLAAKSFITDETEEDAIFSLLPLLRKRLIEAHAVSIEEAFM----TGDGSGKPKG--LLTLASED--------S-AKVVTEAKA------------------------------------------------------------DGSVLVTAKTISKLRRKLGRH----G--LKLSKLVLIVSMD---AYYDLLEDEEQDQGNVGRIY-GLPVVVSEYF |
4 | 3j4uA | 0.11 | 0.11 | 3.84 | 0.74 | MUSTER | | VAARMTPIDPQIVEMLNETNEILD-DMTVIEANGTEHKTTVRSGLPTGT-WRKLVQPEKSRTVQVKDSMGMLETYAEVDKALADLNSAAWRLSEDRAFIEGMNQTQATTLFY--DSSIDAEKFMG---LTPRFNSLSAENGQNIIDAGGTGSDNAWLTVWGPNTL-HTIYPKGSQAGLQSRDTLIDAA---GGRYGYRTHYKWDIGLTLWRYVVTKNASAGADLIDLMTQAVELIPNVGM-----GRPAFYMPRKIRSFLRRQITNKVAASTLTMEFDG-IPCRRTDAL |
5 | 3g02A | 0.14 | 0.08 | 2.70 | 0.73 | CNFpred | | ---------------------------------------------------------------------------------------FGITSEWLTTMREKWLSFDWRPFEARLNS---------FPQFTTEI------GLTIHFAALFSEEDAVPIALLHGWPGSFVEFYPI-LQLFREEYTP--------ETLPFHLVVPSLPGYTFSSGPPL-DKDFGLMDNARVVDQLMKD-------LGFGSGYIIQGGDIGSFVGRLLGVGF----------DACKAVHLNFC |
6 | 2pffB | 0.13 | 0.12 | 4.20 | 0.99 | HHsearch-2 | | VGQFDQVLNLCLTNCYLEGHALAAKLLQENDTTKTKELIKYITAIMAKRPFDKKSLFRAVGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV--LVGDLIKFSAETL----SELIRTT-----LDAEKVFTQGLNILE---------WLENPSNTPDKDYLLSIPICPLIGQLAHTPTAVAIAETDSWESFFVSVRLIGVRCEAYPNTSLPPSILENGPMLSISNLEQVQVNKTNSHLPAGKQVEISGKNLVGPPQLYGLNLTLRKAKAPSDQSRIPFSNRFLPVASPFH |
7 | 3j4uA | 0.11 | 0.10 | 3.54 | 0.87 | Neff-PPAS | | -----------------NETNEILDDMTVIEANGTEHKTTVRSGLPTGRKLNYGVQPEKSRTVQVKDSMGMLETYAEVD-KALADLNGNSAAWRLSEDRAFIEGMNQTQATTLFYGDSSIDAEKFMGLTPRFNSLSAENGQNIIDAGGTGSDNASIWLTVWGPNTLHTIYPKGSQAGLQSRDLLIDAAGGRYQGYRTHYKWDIGLTLRDWRYVVRINASAGADLIDLMTQAVELIPNVGM-----GRPAFYMPRKIRSFLRRQITNKVAASGKKVVAFDGIPCRRTDAL |
8 | 5tjtA | 0.13 | 0.09 | 3.12 | 0.87 | HHsearch | | SESYETIFSQRIIRDLQ-KELVVGALFEELPMSSKILTMLVEPDAGK-ATWVAASEEVKGALKEIHFSTYKLAAKSFITDETEEDAIFSLLPLLRKRLIEAHAVSIEEAFM----TGDGSGKPKG--LLTLASE---D-----S-AKVVTEAKA------------------------------------------------------------DGSVLVTAKTISKLRRKLGRH----G--LKLSKLVLIVSMD---AYYDLLEDEEQDVAQVGRIY-GLPVVVSEY- |
9 | 3j4uA | 0.10 | 0.10 | 3.58 | 1.18 | SP3 | | RMTPDGKIDPQIVEMLNETNEILDDMTVIEANGFTEHKTTVRSGLPTGT-WRKLVQPEKSRTVQVKDSMGMLETYAEVDKALADL--NGNSAAWRLSEDRAFIEGMNQTQATTLFYGDSSIDAEKFMGLTPRFNSLSAENGQNIIDAGGTGSDNAIWLTVWGPNTLHTIYPKGSQAGLQSRDTLIDAAGGRYQGYRTHYKWDIGLTLRDWRYVLTKNASAGADLIDLMTQAVELIPNVGM-----GRPAFYMPRKIRSFLRRQITNKVAASTLTMEFDGI-PCRRTDAL |
10 | 3j4uA | 0.11 | 0.11 | 3.88 | 0.91 | PROSPECTOR2 | | STTNDGKIDPQIVEMLNETNEILDDMTVIEANGFTEHKTTVRSGLPTGRKLNYGVQPEKSRTVQVKDSMGMLETYAEVDKALA-DLNGNSAAWRLSEDRAFIEGMNQTQATTLFYGDSSIDAEKFMGLTPRFNSLSAENGQNIIDAGGTGSDNASIWLTVWGPNTLHTIYPKGSQAGLQSLGEDTLIDAAGGRYQGYRTHYKWDIGLRDWRYVVTKNASAGADLIDLMTQAVELIPNVGMGR-----PAFYMPRKIRSFLRRQITNKVAASTLTMEEIAGIPCRRTDAL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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