>PF10123 (344 residues) QLTPAGTFKPNDGRELKPGAWRIDAASAQHVIERFKTRGKPPVIDYEHQTLKKEQNGQPA PAAGWIRDLRWVDGQGLYAVAELTARARDYIKAGEYLYFSPVFEYDEITGTVLAVHMGAL TNDPGISGMEPLSLVAAATAAFLPSNPPRQEPSVNPLLKALLAALGLPETTTEPAAIAAL TALGPLQPLQARANVATAVCTALKLPADATPEVATAACASLAQSQPGAPDPTKWVPIETV TAMQGQIAALTSRQVETDVDALIKPALADGRLLPTLETWARDMGKKDIAALTAFIGASKP IPALAGTQTGGKAPTATASGDQQLSADELAVCNSMGITPEAYRK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | QLTPAGTFKPNDGRELKPGAWRIDAASAQHVIERFKTRGKPPVIDYEHQTLKKEQNGQPAPAAGWIRDLRWVDGQGLYAVAELTARARDYIKAGEYLYFSPVFEYDEITGTVLAVHMGALTNDPGISGMEPLSLVAAATAAFLPSNPPRQEPSVNPLLKALLAALGLPETTTEPAAIAALTALGPLQPLQARANVATAVCTALKLPADATPEVATAACASLAQSQPGAPDPTKWVPIETVTAMQGQIAALTSRQVETDVDALIKPALADGRLLPTLETWARDMGKKDIAALTAFIGASKPIPALAGTQTGGKAPTATASGDQQLSADELAVCNSMGITPEAYRK | |||||||||||||||||||
1 | 5ikyA | 0.16 | 0.13 | 4.38 | 0.67 | SPARKS-K | LAIPGLNTPIGIG----SQRNHIVLDDYDRIMPTLLDLEPSAILNLS-TSARGDRRAQLAPASFSPGPVVFQAGGGYDNPNAFLADQLAHFAEVGVR---PEIEVVTLAGVPVLFMLVA-----AVDQ-----------YHRDPVSGDTSDDSLVPTRKAIAKLLQGTDDAHEKAVELAATQLRPTVEKLRDNALLVDVAIALDLDARVPGGDQVRWLRRELERRG----IGIVDAETLRDELGMSR----------PDVALFRQAEAALAHYPTILDALHPIVDTYRKIEDRLAAHLA----------SAPADPA------ALAEHVLTAARSFGITIRSFVE | |||||||||||||
2 | 1nyaA | 0.10 | 0.05 | 1.81 | 0.84 | FFAS-3D | -----------------------------------------------------------------------------------------------------------------------------------------------------TTAIASDRLKKRFDRWDFDGNGERADFEKEAQHIAEAFGKDAGAAEVQTLKNA-------FGGLFDYLAKEAGVGSDGSLTE-----EQFIRVTENLIFEQGEASFNRVLGPVVKGIVGDGQINADEFAAWLTALGMSKAEAAEAFNQV------------------DTNGNGELSLDELTAVRDFHFGRLD--- | |||||||||||||
3 | 1at3A | 0.15 | 0.08 | 2.55 | 0.35 | HHpred | -IYVAGLYDSGDPG-----ELALDPD----TVRAALPPENPLPINVDHRAR---------CEVGRVLAVVNDP-RGPFFVGLIAVQLERVLETA-AS---AAI-LSR-EERLNYLPSVSLSTKP----DRTLFAIGRRLGTI-----VTYDTS----LDAAIAPFR---HLDPATREGVRREAAEAEL-------------ALAGR--------------------------TWAPG-----------------VEALTHTLLSTAVNNMMLRD---------------------------------------------------------------------- | |||||||||||||
4 | 5ifeC | 0.11 | 0.10 | 3.59 | 0.66 | MUSTER | KILVV-------EPLLIDEDYYARVEGREIISNLAKAAGLATMIST--RPDIDNMDEYVRNTTARFAVVSALGIPSLL------PFLKAVCK-------------SKKSWQARHVQQIAILMGCAILPVEIIEHGLVDEQQKAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIEFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVAEIISRIVDDLKDEMETIEKIMGNLGAADIDHKLEEQLIDGQEQTTEDSVMLNGFGTVVNALGKRVKPYLP | |||||||||||||
5 | 4r0zA | 0.09 | 0.06 | 2.11 | 0.63 | CNFpred | ------------------------------------------------------------------------------------APSKITFLSLGPQILVSILREYSDHRKLIYTVVRCIRSLSVCPSNKPALISL-------------------GCLPALYVELCTAKERSQTAILVAMRNLSDSATNENLTQLIIKLLEIIRVANDGMTACACGTLSNLTC------NTRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTAHSLAEEAQSELRFCAFPVILDQLETLRTPV----------------------IKAALGVIRNSALLQTNLIE | |||||||||||||
6 | 2aqeA | 0.19 | 0.02 | 0.75 | 0.50 | HHsearch-2 | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSNSGRRSA---PPLNLTG-LPGTEKLNEKEKELCQVVRLVPGAYLE | |||||||||||||
7 | 1r9lA | 0.07 | 0.06 | 2.31 | 0.72 | Neff-PPAS | ---------DLPGKGITVNPVQSTITEETFQTLLVSRALEKLGYTVN-----------KPSEVDYNVGYTSASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKNPGWGCEGAINHQLAAYELTNGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYNKAWAEKNPAAAKLFAIQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNEALAAQK----------------------------------------- | |||||||||||||
8 | 2eljA | 0.24 | 0.03 | 0.90 | 0.52 | HHsearch | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSSGMTISDIQH------APDYALLSNDEQQLCIQLKILPKPYL- | |||||||||||||
9 | 4ke2A | 0.19 | 0.11 | 3.55 | 0.56 | SP3 | ------------------------------------------------------------------------------------------------------------------------------MNIDPAARAAAAAAASKAAVTAADAAAAAATIAASAASV---AAATAADDAAASIATINAASAAAKSIAAAAAMAAKDTAAAAASAAAAAVASAAKALETINVKAAYAAATTANTAAAAAAATATTAAAAAAAKATIDNAAAA---KAAAVATAVSDAAATAATAAAVAAATLEAAAAKAAATAVSAAAAAAAAAIAFAAAP---------------- | |||||||||||||
10 | 4lypA | 0.07 | 0.06 | 2.55 | 0.93 | PROSPECTOR2 | SEFAFVKIASDGKGLGADDCSGGDRKRMELEIKQMAEMGINNLRVMASSEG-----PDDQPYRMR--------PSMMPQPGKYNEGVFVGLDYDRYNMT--AV--------------MTLGNFWQWSGGFGQYVAWITGNQTIPYPVGDVTYDEFTQFAARFYNDSEIAPKANKLFKDHIYTVQNEAPASWFEEISTFIKKGAGLESKLDEYDFDRAHDHKNVENWGIYDPADPDGLPHANEYMHDFLESRSKWAAQRNPEDETYKYLPSTPTSHKDEYYQKA----FNQIVSLASNRSFSRSTYPPNPYGMVWLGDPPHEPHGWQIIKDYNANLLKVQKELSK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |