>PF10117 (322 residues) LKLDNYVGALETPCGTRIEILPKHFEQGDCIQQSRALLRRMIQKSLDLPTRKVGATALQR FDAPLTEWVINSFLEALDHLIKRGLRFDYQRVEEEQRYLRGQLNTARQMRQPPGRQHQFQ MRHDIFQPDRAENRLLKTALDIVCKTAQDPSNWRLSHELRSMLLEIPSSRDTTQDFKQWR RDRLMAHYQPVKPWCELIIQQQTPLAIAGEWHGMSLLFPMEKLFERYVAACLRDSLPPDA TLHTQRSSEYLCTHEGKKVFQLRPDLMITQGEKSWVLDTKWKRLDSELGSKNYGLSQADF YQLFAYGQKYLDGQGDLVLIYP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LKLDNYVGALETPCGTRIEILPKHFEQGDCIQQSRALLRRMIQKSLDLPTRKVGATALQRFDAPLTEWVINSFLEALDHLIKRGLRFDYQRVEEEQRYLRGQLNTARQMRQPPGRQHQFQMRHDIFQPDRAENRLLKTALDIVCKTAQDPSNWRLSHELRSMLLEIPSSRDTTQDFKQWRRDRLMAHYQPVKPWCELIIQQQTPLAIAGEWHGMSLLFPMEKLFERYVAACLRDSLPPDATLHTQRSSEYLCTHEGKKVFQLRPDLMITQGEKSWVLDTKWKRLDSELGSKNYGLSQADFYQLFAYGQKYLDGQGDLVLIYP | |||||||||||||||||||
1 | 2r7oA | 0.11 | 0.10 | 3.63 | 0.75 | SPARKS-K | HLLRDSELAGLLSMSSASNGESRQLKFGRKTIFSTKKNMHVMDDMARYTPGIIPPVNVDKRRDPYEYFIAHAVVEKMLIYAKHT--REY----AEFYSQSNQLLSYGDVTRFL-SNNTMVLYTDVSQWDSPFRKGIIMGLDILANMTNDLQTLNLYKQTQINLMDSYVQIPDGNVIKKIQYGAVASNSIANLALIKTVLSRHSFATKDGDDNYAVLQFEVTKQMIQDVSNDVRETYARNAKVKALVSTVGIEIAK----RYIAGGKIFFRAGINLL-------NNEKRGQSTQWDQAAILYSNYIVNRLRGFETDREFILTK | |||||||||||||
2 | 1xmxA | 0.11 | 0.09 | 3.40 | 0.84 | FFAS-3D | -AMAIHVGIIDTVSRHIIFIGDH------TQTVIYQRLSDVLNK-RNISTDFPAGSNTSAIKSAIRELAERHRLLSAYEVFRSHWPIFVVEPNSNDTQVQDRITIADYLTIF-----GARGEFNSPQLDQQLYQLGERWASNALEL---GPGLATLNYLATTCRKEQKLDVELSDKQQGY--------RELNLLLSDLVEAKIASYENGILTF--INEEARRFLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVATVVNNKLHIIECK---------TKGMRDGDDTLYKLESLRDLLGGLQARAMLV-- | |||||||||||||
3 | 1xmxA | 0.07 | 0.06 | 2.51 | 0.43 | HHpred | -------------RNISTDFFE-IPAGS-NTSAIKSAIRELAETLKA-RGEE-VKFNAS-CGLRHRLLSAYEVFRS------YHWPIFVVEPNSDDTQVQDRITIADYLTIFGA---RGEF--NS--P--QLDQQLYQLGERWASNALEGPGLATLNYLATTCRKEQKLD--------VELSDKQQGYRELNLLLSDLVEAKIASYENGILTFINRRFANGEWLETLVHSTVKQIQDDTIDRSLNVQ---VYRQLGEREVRNELDVATVVNNKLHIIECKTKGMRD---------GDDTLYKLESLRDLLGGLQARAMLVSF | |||||||||||||
4 | 1vg9A | 0.13 | 0.11 | 3.80 | 0.70 | MUSTER | ILENEEAIPLSSKDKTIQHVEVFCYASQDNRI----TYSQIIKEGRRFNIDLV--SKLLYSRGLLIDLLIKS----VSRYA------EFKNITRILAFREGTV------EQVPCSRADV---FNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGFSEYLKTQKLTPNLQYFVLHSMTSETTSCTVDGLKATKKFLQ---CLGRYGNTPFLFPLYGQ----GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKA---VIDQFGQKHFIIED---SYLSENTCSRVQYRQ-----VLITDGSVDADQQVSILTVP | |||||||||||||
5 | 2ewfA | 0.09 | 0.07 | 2.62 | 0.71 | CNFpred | -----YTGLFVAR-GNQLVLNPE---KSDLIDEIISS-EEFHEYYGNPSLP-----QFSFETKEQLLDLAHRIRDENTRLAEQLV-EHFPNV-------------------------------------KVEIQVLEDIYNSLNKKVDVETLKDVIYHAKELQLELK----KKKLQADFN------DPRQLEEVIDLLEVYHEKKNVIEEKIKARFIANKNTVFEWLTWNGFIILG-NALEYKNNFVIQPVTHA-----AGNQPDMEIIYEDFIVLGEVTTSKGATQFKMES----EPVTRHYLNKKKELEEKELYCLFIAP | |||||||||||||
6 | 1y88A | 0.07 | 0.02 | 0.75 | 0.86 | HHsearch-2 | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NLYFQGHMVARLLEEH---GFETKTNV---IV-Q---GNCVEQEIDVVAERDGERYMIECKFHNIP-V---------YTGLKEAMYTYARFGFT--QPWIFTN | |||||||||||||
7 | 3tnfB | 0.10 | 0.09 | 3.45 | 0.77 | Neff-PPAS | ------------ENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSELSLSEINEKMEAFSKDSEKLTQLMEKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQK-GQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQ-------GEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLV | |||||||||||||
8 | 3s1sA1 | 0.11 | 0.03 | 1.24 | 1.17 | HHsearch | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LNNCVFSYLPSYGDD--EVS----VYHPICEAALNQALVNTGLDTYEVVHHEL-----------VGSIEADFVIKNKKYLLIVEVKRTKSQV--------SSTRYRLQAQSYVREANIKVHYYCLTF- | |||||||||||||
9 | 5cwmA | 0.10 | 0.07 | 2.61 | 0.79 | SP3 | -----------------------------DPEDELKRVEKLVKEAEELQAKEKGSEEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELV------VRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALE-----RALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGSEEAKERAEREARELQERVKELRER------------------------------------------------------------- | |||||||||||||
10 | 5wggA | 0.09 | 0.09 | 3.27 | 0.84 | PROSPECTOR2 | FSMMGTNIVVDVNSGAVHVV--------------DDISFDILDYYKNFTAGEI----KNKLAHKYNADEIDEALREIESLEAEGLLFSEDPYKEYVSSMDRKKKAIDFLISESGNRKNLEIDFD------VVKGIIEYARQKEKEHNKNDENIKYINEVNDRMRIRIDGSGCYDDAESRNQDNNMDFSNDVLHLADISVEPVVAAKDSGYDLREEDLPRLFEEYEKLAYEYVKRRKGNWFNFFHFMIDLTQIVKRLTGCGSGHEYLAVTPEGDIYPCHQFVGNEKFKMGNVKEGVLNRDIQNYFSYNFHKDINTVYALWIKM | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |