Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | KIRIKFKKEGSMKFIGHLDIMRYFQKAMRRADIDIAYSEGYSPHQIMSFASPLGVGITSDGEYIDIEIKNRISSKEAMHKLNEVMVEGIEILSFRQLPKDSKNAMSIVEAADYEIKFREGYEPKLWEERLKDFFTQEEITVTKKTKKSEKEVDIKPMIYSLNVSNGKVSMQIASGSANNLKP |
1 | 1vs3A | 0.14 | 0.12 | 3.92 | 0.94 | SPARKS-K | | RLLLLCEYDGLRT------VQGELERALPGIGALPK----------AVAAGA---GVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDRKDALW--RAYRYRILVRRPLDLEAMEEALSLLL---------------GRHNFLGFLLEARLQVAEVRLYFRGKSFLRGQV |
2 | 1vs3A | 0.12 | 0.11 | 3.90 | 0.95 | FFAS-3D | | RLLLLCEYDG-TLFAGLQTVQGELERALPGIGAL----------PKAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHA-RKDALWRAYRYRIRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPGERELLEARLQVAEGEAGLEVRLYFRGKSFLR- |
3 | 1dj0A | 0.16 | 0.14 | 4.58 | 0.59 | HHpred | | KIALGIEYDGS-KYYGVRSVQEKLEKALSQV-A--------NEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHAFSATARRYRYIIYNHRLLDAERMHRAAQCLL--GENDFTSFRATPWRNV------MHINVTGPYVVVDIKANA------ |
4 | 1vs3A1 | 0.12 | 0.06 | 2.13 | 0.72 | MUSTER | | RLLLLCEYDGT-LF-----VQGELERALPGIGALPKA----------VAAGRTDAGVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHARKD---------------------------------------------------------------------------- |
5 | 1vs3A | 0.12 | 0.10 | 3.70 | 0.95 | CNFpred | | RLLLLCEYDG-TLFAGLQTVQGELERALPGIGALP----------KAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAP-DFHARKDALWRAYRYRILVPLDLEAMEEALSLLL--GRHNFLGFA--KEETRPGERELLEARLQVLEVRLYFRGKS------ |
6 | 1dj0A1 | 0.15 | 0.08 | 2.76 | 0.78 | HHsearch-2 | | KIALGIEYDGSKGWQEVRSVQEKLEKALSQVAN---------EPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHA---RFSA------------------------------------------------------------------------ |
7 | 1vs3A1 | 0.13 | 0.07 | 2.30 | 0.93 | Neff-PPAS | | RLLLLCEYDGT-LFAGLRTVQGELERALPGI----------GALPKAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHARKD---------------------------------------------------------------------------- |
8 | 1dj0A1 | 0.16 | 0.09 | 2.91 | 0.95 | HHsearch | | KIALGIEYDGS-KYYEVRSVQEKLEKALSQVAN---------EPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHA---RFSA------------------------------------------------------------------------ |
9 | 3i0oA1 | 0.16 | 0.08 | 2.74 | 0.82 | SP3 | | ---------------------------------------------------------------------QPIQAQQLIELLKVHY--GIDIHTAQFIQGGADTNAFDSESKSYFIKLKYGYHDEINLSIIRLLHDSKEIIFPIHTLEAKLF---------QQLKHFKIIAYPFI-------- |
10 | 2l82A | 0.10 | 0.08 | 3.08 | 0.60 | PROSPECTOR2 | | MSQIFVV------FSSDPEILKEIVREIKRQGVRVVYSDQDEKRRRERLEEFEKQGV---------DVRTVEDKEDFRENIREIWYPQLDVVVIVTTDDKIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDKEELIEQVRRFVRK-----------VGSLEHHHHHH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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