Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | IRVYVGLDTAPTPEERIDLVLAELERTGAFDRSTLVLIPTTGTGWVNPTAARAMELVHNGDLAMVAWQYSYLPSWISFLADREKAAAAGKMLVERVHERWSQLPEDDRPDLFLYGESLGTQSGEGAFDSLAEIRAQMDGVLWVGPPNSNRLWRQLVERRDPGTTEVQPVYADGLVVRFADSREAIHEPETPWLSPRVLYIQHASDPVVWWSPDLLFSRPDWLSEPPGRDRLPQMRWFPFVTFWQVSADLTNAAGVPDGHGHNYGSAVLEGWIAVTQPEGWTENDTERV |
1 | 5h6bA | 0.13 | 0.10 | 3.51 | 0.72 | SPARKS-K | | ---------------TSRGWNDYSCKPSAAHPRPVVLVH--GTFGNSIDNWLLAPYLVNRGYCVFSLDYGQFHGLG-------PIDKSAEQLDVFVDKVLDATGAP---KADLVGHSQGGMMPNYYLKFLG-GADKVNALVGIAPDNHGLGLTKLLPFFSDNTPGLADQVAG------SPFITKLTAGGDTVPGVRYTVIATKYDQVVTPYRTQY------LDGPNVRNVCPVDLSE----------HVAIGTI---------DRIAFHEVANALDATPTTCASVI-- |
2 | 5x88A | 0.19 | 0.11 | 3.69 | 0.67 | FFAS-3D | | ---------------------NDLRDGPCKD---ITFIFARGSTEVGPDTCDELNREFRGRVACQGVGPRYEASLAGNFLPRGTTQAAIDEAAELFNLAHTKCPN---TQIVGGGYSQGAAVMHGAIPGLNAVKDQIKGVVLYGDT------------RNEQDGGRIPNFPTDKTNIICNPG-----------------------------------------------------------------DLVCDGTLILTAAHTYGTRVRGAVDWLED------------ |
3 | 2czqA | 0.19 | 0.12 | 3.92 | 0.50 | HHpred | | --------------------------------PQYVLINTRGTGEGFRTMNSQITAAL-SGGTIYNTVYTADFSQ-------NS-AAGTADIIRRINSGLAANPN---VCYILQGYSQGAAATVVALQQLGAAFNAVKGVFLIGNPDHKSGL-TCNVDSNGGTTT---RNVNGLS------VAYQGSVPSGWVS-KTLDVCAYGDGVCDTAHGF--------G-----INAQHLSYPSDVMGYKFAVNKLGG------------------------------------ |
4 | 5h6bA | 0.15 | 0.12 | 4.09 | 0.74 | MUSTER | | --------TSRGWND----------KPSAAHPRPVVLV---GTF--NSIDNVLAPYLVNRGYCVFSLDYGLPGVP---FHGLGPIDKSAEQLDVFVDKVLDATGAP---KADLVGHSQGGMMPNYYLKFLG-GADKVNALVGIAPDNHGLGLTKLLPFF-PGVEKFISDNTPGLADQVAGSITKLTAGGDTVPGVRYTVIATKYDQVVTPYRTQYLDGPN----------------VRNVL-------LQDLCPVDLS-EHTIDRIAFHEVANALPARATPTTCASVI |
5 | 4gxrA | 0.10 | 0.08 | 2.82 | 0.91 | CNFpred | | ------------LVARAGRVANVLVARGLQVGDRVAAQTEM----SVEALVLYLATVRAGGVYLPLNTA---------------TLHELDYFITDA-----------EPMIVVCDPS--------MRDGIAAIAAMVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGT---------TGRSMGAMLSHD------NLASNSLTLVDYWRFTP----DVLIHALPIYHTHGLFVASNVTLFARGSMI-TVLMGVPTFYTRLLQSPRLTMETTGHM |
6 | 2o7vA1 | 0.15 | 0.06 | 2.00 | 0.53 | HHsearch-2 | | VRLFLPRHALY-----------------N-SAKLPLVVYFHGGGFILFSAHDFCEMAVHAGVVIASVDYRLAPEH-----RLPAAYDDAM----EALQWIKDSRDADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKG------------------------------------------------------------------------------------------------------------------------------------------------ |
7 | 5xb6A | 0.11 | 0.11 | 3.86 | 0.77 | Neff-PPAS | | NKVSFTNSNNPTISLSAVIYFP--PKFDETRQYQAIVLSHPGGGVKEQTAGTYAKKLAEKGFVTIAYDASYQGGEPRQLENPYIRTEDISAVIDYLTTL----SYVDNTRIGAMGICAGAGYTANAAIQDR----RIKAIGTVSAVNIGSIFRNGWENNVKSSNARTSDISSGEYAIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPTQGSKWMSDDLYDRASSQDGANHMDLYDGKAYVAEAISVAPFFEETL--- |
8 | 3gbsA | 0.18 | 0.11 | 3.62 | 0.55 | HHsearch | | ------LT-----------GGDELRDGPCKPI-TFIFARASTLGISGPAVCNRLKLA-RGDVACQGVGYTADLPSN-ALPE-GTSQAAIAEAQGLFEQAVSKCPD---TQIVAGGYSQGTAVMNGAIKRLSDVQDKIKGVVLFGYTRNAQE---------RGQ---IA----------------------NFPKDKVKVYCAVGDLVCLGTL--------I-------VAPPHFSYLS---DTGDASDFLLSQ---------------------L------------- |
9 | 1lbtA | 0.13 | 0.11 | 3.85 | 1.05 | SP3 | | ------LPSGSDPSQPKSVLDAGLTCQGASVSKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWIS---PPP-----FMLNDTQVNTEYMVNAITALYAGSGNN---KLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDALAVSAPSVWQQTTGSAL------TTALRNAGGLTQIVPTTNLYSATDEIV---------QPQVSNSPLDSSYLFNGKNVQ----------AQAVCGPLFVIDHATSQFSYVVGRSALRANDLTPEQKVAA |
10 | 1gkpa2 | 0.09 | 0.08 | 2.95 | 0.91 | PROSPECTOR2 | | YIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHM----AVSKFDEKTEGQLREIVADGISSFIFLSYKNFFG-----VDDGEMYQTLRLAAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVP-----------IYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDCPFDTE-------QKLLGKEAFTAIPNGIPAIED----RVNLLYTYGVSRGRLDIHRFVDA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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