Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | VVKWLHILSSTFLFGTGIGSAWYMLFANISRDVRAIAVVSRNVVIADWVFTATTAIIQPATGFYMIHLAGYPWHSKWIMWSIALYVLAGACWLPVVWIQIRLRDLAAEAVRNNTELPPQYWRLFKTWVALGVPAFIAFVVIFWLMVAKP |
1 | 4bemJ | 0.12 | 0.12 | 4.26 | 1.13 | FFAS-3D | | IVDFVIQFLGFSALGIGLAMVAGVGPGIGQGFAAGKGAEASNDIVMIMLLGAAVAETSGIFSLVIALILSSTASVWILSASAMASGIAMIAGIGPGTGQGYAAGKGAEAVGIRPEMKSAILRVMLLGQAVAQTTGIYALIVALILMYAP |
2 | 5doqA2 | 0.08 | 0.07 | 2.88 | 1.01 | HHsearch | | PTKVAHVLATSYMTSAFVLASIAAWHLWKGNRHIY----HRKALHLTMKTAFIFSVASALVGDLSGKFLHFETYIHYFDVMVTIGVFLMVVAAVYWLGSFR------WKW----TAKNWFFGLLVAGGPLAMIAIEAWYLAE--VGRQ- |
3 | 6bhpA | 0.09 | 0.09 | 3.34 | 1.01 | SP3 | | LNKFIYVGLVISQLLTLAAYVVVTAGAALLQKKANTLTLFDTQEGIDKYTPVYKEVFTATTYIIAYPQQPQYQQYQWWIIQFELFVFLLTAACTVFPSIIKRMRPVALTFIARNETAKAVFDDYRIATAQAGLIMVGVANGLTIFFL-- |
4 | 6idpA | 0.11 | 0.10 | 3.66 | 0.97 | SPARKS-K | | FTMPIQMVIIGIQVGLGIATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAP--ETVFAIIDHYWLWWLASAWTGAMLYFYYSVCRAN------GNTLLPGTLMMVTSVLNLILDPIFIDGAAIATIIA |
5 | 4av3A3 | 0.10 | 0.10 | 3.68 | 1.09 | FFAS-3D | | ---YVAALFFLIPLVALGFAAANFAAVVRKPETERMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIFTTWQTGVAFLLGAVMSASAGIVGMKMATRANVRVAEAARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYL-- |
6 | 5doqA | 0.15 | 0.13 | 4.30 | 0.25 | HHpred | | LTLTVHIIYATIGVGVPLMIAIAQWVGIRKNDMHYI-LLARRWTRGF----VITVAVGVVTGTAIGLQLSWPFSLPLFMETFAFFFEAIFLGIYL-YTW--------------DRFENQHLLLLIPVAIGSSASAMFITMVNAFMN-TP |
7 | 4xydA1 | 0.10 | 0.10 | 3.68 | 0.93 | MUSTER | | SIALVYFAVALGLFAIQVSGGLLLGWIYVSFLSEILPFNIVRMLHTNSLIVWLLLGFMGAAYFVIPEESEREIHSLLAYLQLAIMVLGTLGVVVTYLFNL------FEGNWLLGKEGREFLEQPVWVKMGIVVAALIFMYNISMTVLQG |
8 | 5y50A | 0.09 | 0.09 | 3.33 | 0.96 | CNFpred | | EFFRFGIPSASMICLEWWSFEFLVLLSGILPNPKLEASVLSVCLSTQSSLYQIPESLGAAASTRVANELGA----NPKQARMAVYTAMVITGVESIMVGAIVFGARNVFGYLFSSETEVVDYVKSMAPLLSLSVIFDALHAALSGVARG |
9 | 3jacA | 0.06 | 0.05 | 2.40 | 0.72 | HHsearch-2 | | LVVAIHIWMFF--ILPAVTERMFFVKCIYALSAYQIRCGY--PTRLGNFLTKYNHLNLFLFQGFRLVPLELRAVMDWVWTDTTLSLSNWIYAIFIIKCSRETEKKYPQ--PKGQKK-KKIVKYGMGGLIILFLIAIIWFPLLFMSLIRS |
10 | 1xmeA2 | 0.10 | 0.10 | 3.70 | 0.93 | Neff-PPAS | | NPAFVAPVLGLLGFIPGGAGGIVNAS--FTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPIQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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