Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | SYTAFDGHRRLVSGPLATVALAVRQAAGDATPGTILIFDDATGRAIDLDLRGTADEIRARYAAAPADASAPASADEPRGRGRPKLGVVSREVTLLPRHWDWLATQPGGASVALRKLVEDARRTHAAADRRRDAQARAYHFMSAIAGDLPGFEEAARALYANDLARLAELIAGWPDDVRDHALALA |
1 | 5w98A | 0.11 | 0.11 | 3.88 | 0.61 | SPARKS-K | | RFDVAYHDP-----DLDRLILAARPLLSESPGRSWFQRHWVRGPHLELWFDHSWERVREVLGTHLRAHPSRTRIDPEPLLPFYDDNTLHRAVPRVLGSAAAEDLFHDFHAAASTAAFDQLDAVVAGESRLGLAFELMIAAAHAHA--EGGITGGFVSFRSHLRERWEAEYRTRAEALRAQVAAVV |
2 | 1vykA | 0.10 | 0.06 | 2.18 | 0.62 | FFAS-3D | | ----------------------------------------------------PPTEAAQRAKVSASE-------------------ILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEK-KSLQELTSKLFSSI-------DNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG |
3 | 2mbzA | 0.14 | 0.09 | 3.12 | 0.25 | HHpred | | -----------------------------------EVFGDFD-------PDQYEEEVRERWGNTDAYRQ----S-KEKT------------ASYTKEDWQRIQDEA----DELTRRFVALMDAPADS---EGAMDAAEDHRQGIADCGYEMHTCLGEMYVSD-ERFTRNIDAAKPGLAAYMRDAI |
4 | 1lihA | 0.12 | 0.10 | 3.61 | 0.66 | MUSTER | | -----MG---LLFSSLQHCQQGFVISNELRQQQSEL----TSTWDLMLQTRINLSRSAARMMMDASNQQSSAKTDL--------LQNAKTTLAQAAAHYANFKNMTP--LPAMAEASANVDE---KYQRYQAALAELIQFLDN---NMDAYFAQPTQGM---QNALGEALGNYARVSENLYRQTF |
5 | 2a3nA | 0.13 | 0.10 | 3.54 | 0.57 | CNFpred | | ---------LFFASVSLAPMMAINEFAKELTTLPVYVEQAA-SVVITLSKSGDTKESVAIAEW-------------CKAQGIRVVAITKNDSPLAQ-TWHIPMRHKNGVEYEYMLLY------------------WLFFRVLSRNNEFASYDRFASQLE-ILPANLLKAKQKFDPQADAIASRYH |
6 | 5eybA1 | 0.19 | 0.05 | 1.75 | 0.40 | HHsearch-2 | | -------------------------------------------------------------------------------------------ARWTAEHWDYLE-----------RRMQNFCQTYSLHTQVAFTRRTILRHLRAL-YNIPGYEKYSR----------------------------- |
7 | 5cwqA | 0.15 | 0.14 | 4.76 | 0.61 | Neff-PPAS | | -------ESEEAERRLQEARKRSEEARERGDLKELAEALIEEARAVQELARRGNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAE |
8 | 2p0tA2 | 0.12 | 0.05 | 1.70 | 0.39 | HHsearch | | ---------------YNE-------------------------------RFHNLERWRDRLIAG---------------------DD--------ADLEKFVIEYPDADRQQLRSLIRQAQHEVARN-KPPATSRKIFKYIRELDELQ------------------------------------- |
9 | 5mruA | 0.17 | 0.14 | 4.46 | 0.59 | SP3 | | ---------------LNTVIRAALDLLNEVG------VDGLTTRKLAL-----LDALAEAMLAENHSTSVPRADDDWRSFLTGNARSFRQALLAYRDGARIHAGTRPGQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAV-----LEEQAGDSESGEEAGPDAAFE---QGLAVIVDGLA |
10 | 1q0rA | 0.13 | 0.11 | 3.94 | 0.71 | PROSPECTOR2 | | SERIVPGDVELWFGDFGELAADAVAVLDGWGVDRALTMLLGGG------LDIDFDANIERVMRGEPTLDGLPGPQQP-----------------FLDALALMNQPAEGRAAEVAKRVSKWRIGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAGKHLAGLIPEVILAHTRSAA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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