Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | PSGRTHDRITLWALPFVAGVAFWQTRSSSVTLLVAGGFMFGGLMFGPDLDIYSRQYQRWGYLRWIWLPYQKSLRHRSFLSHGPIIGTTLRVIYLSCLLAIAAFIILVIFEKLGNTRFNWSGLGENIQKSLVSYDKEYLALFLGLELGAMSHSLSDWCGSAYKRMQ |
1 | 4o6mA2 | 0.15 | 0.13 | 4.49 | 0.91 | SPARKS-K | | DTSVTPNQITVFSFFLSLVGSALFLLSYLTTLLAGVIIQLHSIIDG--CDEIARLKFM-----------AWLDGVLDRYSDFIIVFSITYVLSIGFLAAFASLMIAYTGDKFVAIPITRDFRLLIIFACSVVNLPSLALVIIALLGNFEALRRIVALRSY----- |
2 | 5vreA | 0.09 | 0.08 | 2.97 | 0.68 | FFAS-3D | | ---SETGRIEAFSDGVFAIAITLLVLEWPSYLAFLTSFAS---------------------ILVMWVNHHRIFSLVARTDHAFFYWNGLLLMLVAGIFLAIAIVFNRLWKHAATDRHEVDAITKQYRFGPGLYLVAFALSFISVWLSVGVCFVLAIYFALRSN-- |
3 | 5uowB | 0.13 | 0.08 | 2.92 | 0.27 | HHpred | | SAGT-V-SP-SAFLEPFS---------ASVWVMMFVMLLVSAEYFSPV---HG---PSFTIGKAVWLLWGLVFNNSL--PVQNPKGTTSKIIVSIWAFFAVIFLASYTANLAIRFVDGLSDNKF----------------------------------------- |
4 | 3wajA1 | 0.12 | 0.12 | 4.07 | 0.80 | MUSTER | | HDLTARQMAYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVV-LIYLPFAFNYPGFSTIFYSQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGRKGMPLAVIVLTALIMGLVLHFGALFFFGMAGILYSAYRFL-----KRRS |
5 | 3rkoC | 0.09 | 0.08 | 3.04 | 0.97 | CNFpred | | MSSGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILL----KTAAYGLLRFSLPLFPNAS--------AEFAPIAMWLGVIGIFYGAWMAFATDIKRLIAY--TSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERI |
6 | 1vt4I3 | 0.12 | 0.08 | 3.02 | 0.78 | HHsearch-2 | | --------------------------EYALHRSIVDHYNIPKTFDSDDLIPPQYHPERMTLFRMVFLDFRFLEQKDSTAWN-ASGSILNTLQQLK-FY------KPY-------ICDNDPKYERLVNAILDFLPKI----EENLICTDLLRIALMAEDEAHKQVQ |
7 | 3rlbA | 0.07 | 0.07 | 2.70 | 0.87 | Neff-PPAS | | --------WIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWG------AVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY-- |
8 | 2l9uA | 0.17 | 0.04 | 1.39 | 0.24 | HHsearch | | -MGRTHLTMALTVIAGLVVIFMMLGGTFLYW-----------------------------------RGRRHHHHH-----H------------------------------------------------------------------------------------ |
9 | 1xx7A | 0.10 | 0.08 | 3.13 | 0.79 | SP3 | | ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIILGEAIIT---DLPLSAQKYLNKEEAEAKALKDVLP--EYTELSKALTLEGQLVKIADKLDMIIQAYEYELSGAKNLSEFWNALEDLEKLEISRYLREIIEEVRRL--------------------- |
10 | 2vprA | 0.07 | 0.06 | 2.53 | 0.67 | PROSPECTOR2 | | AKLDKEQVIDLLDALAETILQKHHNETWQDFLRNNAKSFRQALLMYRDGAGTRPSESQFETSEQQLQFLCDA----------GFSLSQAVYALSSIAHFTLGSVLETQEHQESQKEAYPPLLTQAVAIMDSDNGDAAFLFVLDVMISGLETVL--------KSAK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|