Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | TLQRPSMRGVPFILVRTDRAGNISKRQSATAFHFSRVGGNCPLWVVHEAFSNPGQFVTQVAEMPDGRTYFWVARTSSTSTGGFLGTPKSFAIGLGCDIAHAHRLVYSTGIAIDDPSTAVPIGPGCKVCVRESCAQRAFPYIGRSVHVDEDASSGLPY |
1 | 6cyjA2 | 0.72 | 0.68 | 19.17 | 6.01 | SPARKS-K | | ---------IPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY |
2 | 6cyjA2 | 0.72 | 0.68 | 19.17 | 2.74 | FFAS-3D | | ---------IPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY |
3 | 6cyjA | 0.72 | 0.72 | 20.43 | 8.08 | HHpred | | TLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY |
4 | 6cyjA | 0.72 | 0.72 | 20.43 | 3.98 | MUSTER | | TLQRPRQRGIPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY |
5 | 4wy9A | 0.12 | 0.06 | 2.26 | 0.76 | CNFpred | | ------------LRVLLNSDGFMAIHPNLVLKNLKDINPNKGAQETYKAISE-GKNGVFNYIASDGDDSYAAINSFKVQ-------DSSWAVLVTAPKYSVFKPL---------------------------------------------------- |
6 | 6cyjA2 | 0.72 | 0.68 | 19.17 | 4.63 | HHsearch-2 | | ---------IPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY |
7 | 6cyjA2 | 0.72 | 0.68 | 19.17 | 6.39 | Neff-PPAS | | ---------IPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY |
8 | 6cyjA2 | 0.71 | 0.67 | 18.99 | 7.02 | HHsearch | | ---------IPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLP- |
9 | 3lifA | 0.12 | 0.11 | 4.05 | 0.56 | PROSPECTOR2 | | DVSFKWRPHPSSDVAILDADGQL--TYASVKPVPALDNSDRSYFRYHRANDDHTLLITGPIQSRSGVWVFVVSRRLETTDGKF-----FGVVVATIESEYFSTFYKTFDLGPGGSWPSLQTGRDANVLFQKALPRSPDGYYLTVSPFDGLEDSVLSG |
10 | 6cyjA2 | 0.72 | 0.68 | 19.17 | 2.29 | SAM | | ---------IPFIFVRTDKAGNISKRQSATAFHFSRVGGSCPLWVVHDAFAQPERIVRQVAQMPDGRSYFWVAKTTAADGLGYLGPHKNFAVGLGCDLAHAHKLVYSTGVVLDDPSTEVPIGAGCKICNRTSCAQRAFPYLGGRVAVDENAGSSLPY |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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