Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | PVGIQSFEKIREGGYCYIDKTSLIYSLIKSGQYYFLSRPRRFGKSLLISTLEAYFLGKKELFKGLAMEGLEKDWTTHPVLHLDLNTQKYDTPEALNNVLEENLNYWESLYGASESEIGVARRFNGIIRRAAEKAGQKVVVLVDEYDKPMLQAIGNEPLLTDYRNTLKAFYGALKSNDKYLRFALLTGVTKFSKVSVFSDLNNLMDISLSNRFANICGITENELYRNLEEDIRLLAEANGMNETEARQTLKEWYDGYHFAENTEDIYNPFSLLNTLA |
1 | 2fnaA | 0.16 | 0.12 | 4.09 | 0.83 | SPARKS-K | | ---GLFDTSPKDNRKDFFDREKEIEKLKGRAPITLVLGLRRTGKSSIIKIGINELN--------------------LPYIYLDLEERNYISYKDFLLELQKEINKLVKRLPS------LLKAFANLLESFEQASKDNVIIVLDEAQELVKLRGVN------LLPALAYAYDNLK------RIKFISGSEGLLYDESPLFGRAFSTVELK-------PFSREEAIEFLRRGFQEAD--IDFKD---YEVVYEKIGGI-----------PGWLTYFGF |
2 | 2fnaA | 0.15 | 0.12 | 4.03 | 1.33 | FFAS-3D | | --GL--FDTSKDNRKDFFDREKEIEKLKGRAPITLVLGLRRTGKSSIIKIGINELNLP--------------------YIYLDLEERNYISYKDFLLELQKEINKLVKRLPIGNEIKFNRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN------LLPALAYAYDNLK------RIKFISGSEGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-----YEVVYEKIGGIPG------------WLTYF- |
3 | 1fnnA | 0.10 | 0.08 | 2.83 | 1.38 | HHpred | | ----SVFSPS-YVPKRLPHREQQLQQLDIGYPRATLLGRPGTGKTVTLRKLWELYKD----------------KTTARFVYINGFIYR--NFTAIIGEIARSLNI-----PFPRRGLSRDEFLALLVEHL-RERDLYMFLVLDDAFNLA------P----DILSTFIRLGQEDKLGAFRIALVI-VGHNDAVLNNLRGIMGK-YVI-------RFSPYTKDQIFDILLDRAKAGLAEGSYS-EDILQMIADITGGDARLAIDI------------- |
4 | 2fnaA | 0.17 | 0.13 | 4.30 | 0.89 | MUSTER | | TSPKDNRKDF-------FDREKEIEKLKGRAPITLVLGLRRTGKSSIIKIGINELN--------------------LPYIYLDLEERNYISYKDFLLELQKEINKLVKRLPSALKNIQGIVSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN------LLPALAYAYDNLKR------IKFISGSEGLLVEDPESPLFAFSTVELK-------PFSREEAIEFLRRGFQEAD----IDFKD-YEVVYEKIGG-----------IPGWLTYFGF |
5 | 2qenA | 0.15 | 0.12 | 4.01 | 1.05 | CNFpred | | --------------EDIFDREEESRKLEESYPLTLLLGIRRVGKSSLLRAFLNE----------------------RPGILIDCRELYHITREELIKELQSTISPFQKFQSKF-RKLSLREVFRELNDLGEEL--GEFIVAFDEAQYLRFYG----RGGKELLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKSPLRIAGEVLVK-------PFDKDTSVEFLKRGFREVNL---DVPENEIEEAVELLDGIPGWLV----VFGVEYLRNGD |
6 | 2fnaA | 0.15 | 0.13 | 4.24 | 0.70 | HHsearch-2 | | LFDTSP----KDNRKDFFDREKEIEKL-KRAPITLVLGLRRTGKSSIIKIGINEL--------------------NLPYIYLDLRKFEERSYKDFLLELQKEINKLVKRLPSLIQGVEKFLSFANLLESFEQASKDNVIIVLDEAQELVKLRG------VNLLPALAYAYDN---L-KRIKFI--SGSEGLLYDDPESPLFRASTV-------ELKPFSREEAIEFLRRGFQEAD--IDFK--D-YEVVYEKIGGIPGWLTY-FGFNLDFAINTLE |
7 | 5aj3g | 0.12 | 0.11 | 3.97 | 0.86 | Neff-PPAS | | PPRFAMQVKTFNEACLMVPALELLHYLKNTAVRYVLYGEKGTGKTLSLCHILHFCAKQN--WLILHIPDAHIWVKNCRDLLQSNYNKQRDQPLEASTWLKNFKTANEHFLSQIMRVRNATDAVGIVLKELKRQSSLHLLVAVDGVNALWGRTTLKSPIAPEELALIHNLRKMVKNDWQGGAIVLTVSQTGSLFKPRNAYL---PQELLGKEGFDALNYNPKEFESCIQYYLENWLQHEKAHTEEGKKELLFLSNR-----------NPGQLERLCA |
8 | 2fnaA | 0.16 | 0.13 | 4.24 | 0.86 | HHsearch | | LFDT----SPKDNRKDFFDREKEIEKL-KRAPITLVLGLRRTGKSSIIKIGINEL--------------------NLPYIYLDLRKFEERSYKDFLLELQKEINKLVKRLPSNIQGVEKFLSFANLLESFEQASKDNVIIVLDEAQELVKLRG------VNLLPALAYAYDN---L-KRIKFI--SGSEGLLYDDPESPLFRASTV-------ELKPFSREEAIEFLRRGFQEAD--IDFK--D-YEVVYEKIGGIPGWLTY-FGFNLDFAINTL- |
9 | 2fnaA | 0.14 | 0.12 | 3.99 | 1.20 | PROSPECTOR2 | | TSPKDNRKD-------FFDREKEIEKLKGRAPITLVLGLRRTGKSSIIKIGINEL--------------------NLPYIYLDLEERNYISYKDFLLELQKEINKLVKRLPSGNEIKFNRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN------LLPALAYAYDNLKR------IKFISGSEGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAIYLDNKNLDFAINQTLEYAKCGKIKEGEKYCPSEPLISLAFS |
10 | 2qenA | 0.16 | 0.12 | 3.83 | 1.43 | SAM | | ------------RREDIFDREEESRKLEENYPLTLLLGIRRVGKSSLLRAF------------------------ERPGILIDCRELYAETREELIKELQSTIFLTLEP----------KLSLREVFRELNDE-LGEFIVAFDEAQYLR-------FYRKELLALFAYAY---DSL-PNLKIIL-TGSEVGLLHDFESPLYGRIAGEV-----LVKPFDKDTSVEFLKRGFREVNL--DVP-ENEIEEAVELLDGIPGWLV--------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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