Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | MAELPPLRIATQIATLQALYYVGAIILMLFTALVAGISFTLDVVFGWDAVRGDTTQGWLCGFVLVLDGGFCMAIAIILLVSRSKLVPDFAVTIHALHLVITTLYTGRVPRNAMWWACMMASAGLCAALGVWGSRYRELRPIYF |
1 | 3rkoB | 0.08 | 0.07 | 2.72 | 1.04 | CNFpred | | -----GPTPVSALIHAATMVTAGVYLIARTHGLFLMT------------------PEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQA-WDAAIFHLMTHAFFKALLFLASGSVILACHEQNIFK |
2 | 6idpA1 | 0.07 | 0.07 | 2.85 | 1.06 | Neff-PPAS | | ------TEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAIIDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFDLIDGAAIATIIAFGVGIAIVAPKVAQRQWTSYQW |
3 | 6ajfA3 | 0.08 | 0.08 | 3.05 | 0.88 | SPARKS-K | | FLAFGSVVLPIKAALMSALTLGSTMGILTWMFV----DGHGSGLMNYTPQPLMAPMIGLIIAVIWGLSTDYEVFLVSRMVEARERTATTGRLITGAALILAVVAGAFVFSDLVMMKYLAFGLLIALLLDATIIRMFLVPAVMK |
4 | 5ys3A | 0.09 | 0.09 | 3.42 | 0.82 | FFAS-3D | | ----NPAPLGLMGFGMTTILLNLHGIILAMGIFYGGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAIGVFTLFMFFGTLKAARALQFVFLSLTVLFALLAFGNIAGNEAVIHVAGWIGLVCGASAIYLAMGEVLNEQF- |
5 | 4nefA | 0.16 | 0.15 | 4.86 | 0.25 | HHpred | | -AHINPFYVAAQLLGAVAGAALLHE--------ITP--ADIRGDLAVNALSNSTTAGQAVTVELFLTLQLVL-CIFASTDERRGENPGTGFSVALGHLLGIAVVTGKFDDHWVFWIGPLVGAILGSLLYNYVLFPPAKSL--- |
6 | 4lz6A2 | 0.10 | 0.09 | 3.39 | 0.97 | MUSTER | | ----Q-YSRLRETVMLGFKVATIFSIGIFALLMLFPEALL--RVFDREVIQAGVSAMHILFCVTFLIGAQIVAGGLYQSLGKPKQALILSLSRQIFLIPLVLILPHIFGLSGV-WWAFPIADVLSFILTVVLLYRD-RNVFFL |
7 | 5xtcr | 0.09 | 0.08 | 3.15 | 1.03 | CNFpred | | -----LPKAHVEAPIAGSMVLAAVLLKLGGYGMMRL-----TLILNPLT------KHMAYPFLVLSLWGMIMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMIL |
8 | 6cc4A | 0.07 | 0.07 | 2.83 | 0.48 | HHsearch-2 | | YGKFTATQRALIAYSVGLIGLIVVKVLAPGFY-SRQDIKTMNLAFIG----PLKHAG--LSLSIGLAACLNA-SLLYWQLRKQKIFPGWMAFLLVVMSGVLLGMLHIWLGTPWRLLRLMAVVLAGIYFAALAVLGFKVKEFA- |
9 | 6fv6A2 | 0.08 | 0.08 | 3.01 | 0.98 | Neff-PPAS | | -------NYRGMVHAVNTSAHFTALVMSLTGLILILFPHYLVYPFSPEVIEWASYYLQIVGISQPAMAYASIYSGALKGMGKTHIPLFVNISSFWLFRIIPSYFLLKVISPLVPWGFMTFETAVRALFYYTVFKKVVGKLL-- |
10 | 4fxgB2 | 0.07 | 0.05 | 2.03 | 0.46 | HHsearch | | -------VNFQKAINEKLGQYAS-PTAKRC--CQDGVTRLP-MMRSCEQR-AARVQQPDCREPFL-SCCQFA-ESLQAGLQRALEEEDLI--------DEDDIPEVTVKGHVEYTMEANED-------------------ED- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|