Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | VPIIQQLYHWDCGLACSRMVLRYLGQLHDREFENALQELQLTRSIWTIDLAYLMRHFGVRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAKACKVQVEKCTVSVQDIQAHLAQGHVAIVLVNSGVLHCDLCSSPVKYCCFTPSGHRCFCRTPDYQGHFIVLRGYNRATGCIFYNNPAYADRMCSTSISNFEEARTSYGTDEDILFV |
1 | 3ervA | 0.18 | 0.15 | 5.00 | 1.72 | SPARKS-K | | VPFIQQLPDRGCEVTSLAMMLQYAGITVDMKLANEIKKVDFMVRGNPNEG--------------FVGNIYTFSESGYGVYH----------GPLFQLAKKYPNKAVDLGKSIEELYKSVKAGQPVVIITNATFAPLD------EDEFTTWETNNGDVSITY-NEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMGS--QAISY |
2 | 3ervA | 0.19 | 0.16 | 5.29 | 1.95 | FFAS-3D | | VPFIQQLPERGCEVTSLAMMLQYAGITVDKMKLANEIKKVDFMN--------DGVRGNPNEGFVGNIYTFSES---------GYGVYHGPLFQLAKKY-LPNKAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLD-------EDEFTTWETNNGDVSITYNEHCVVLIGYD--QESVYIRDPLKDSLDVKVPREKFEQAWVQMGS-QAISYV |
3 | 3ervA | 0.22 | 0.19 | 5.89 | 2.11 | HHpred | | VPFIQQLPELDCEVTSLAMMLQYAGITVDK--MKLANEIKKVD--FM-ND----GVRGNNEGFVGNIYTSESGYGV---Y----H------GPLFQLAKKYNKAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEFTTWETN-----NGD----VSITYNEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQAISYV- |
4 | 3ervA | 0.22 | 0.19 | 5.90 | 1.75 | MUSTER | | VPFIQQLPELDCEVTSLAMMLQYAGITVDMKLANEIKKVDFMND-------------GVRGNPNEGFVGNIYTFSESGYG--------VYHGPLFQLAKKYNKAVDLTGKSIEELYKSVKAGQPVVIITNATFA-------PLDEDEFTTWETNNGDVSITYNEHCVVLIGYD--QESVYIRDPLKDSLDVKVPREKFEQAWVQMGS--QAISY |
5 | 3ervA | 0.22 | 0.18 | 5.76 | 1.41 | CNFpred | | VPFIQQLLDRGCEVTSLAMMLQYAGITVD-----------------KMKLANEIKKVDFMNDGVRGNP-------NEGFVGNIYT-YGVYHGPLFQLAKKYPNKAVDLTKSIEELYKSVKAGQPVVIITNATFAPLDE---DEFTTWETN-NGDVSIT---YNEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMG-SQAISYV |
6 | 3ervA | 0.19 | 0.16 | 5.14 | 1.96 | HHsearch-2 | | VPFIQQLPDRGCEVTSLAMMLQYAGITVDK---MKLANEIKKVDFM-----------ND--G-----VRGNPGFVGNIYT-FSESGYGVYHGPLFQLAKKYLNKAVLTGKSIEELYKSVKAGQPVVIITNATFAPLDEFTTWETN-----NGD----VSITYNEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQAISYVK |
7 | 3ervA | 0.19 | 0.16 | 5.28 | 2.05 | Neff-PPAS | | VPFIQQLPELDCEVTSLAMMLQYAGITVD-----------------KMKLANEIKKVDFMNDGVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKYLP-NKAVDLTGKSIEELYKSVKAGQPVVIITNATFAPL-------DEDEFTTWETNNGDVSITYNEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQ--AISY |
8 | 3ervA | 0.19 | 0.16 | 5.13 | 2.90 | HHsearch | | VPFIQQLPDRGCEVTSLAMMLQYAGITVDK---MKLANEIKKVDFM-----------ND-------GVRGNPGFVGNIYTF-SESGYGVYHGPLFQLAKKYLNKAVLTGKSIEELYKSVKAGQPVVIITNATFAPLDEFTTWETN-----NGD----VSITYNEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQAISYV- |
9 | 3ervA | 0.19 | 0.16 | 5.27 | 1.82 | PROSPECTOR2 | | VPFIQQLPDRGCEVTSLAMMLQYAGITVDK---MKLANEIKKVDF-----------------MNDGVRGNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKYLPAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNN-------GDVSITYNEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQ--AISY |
10 | 3ervA | 0.20 | 0.16 | 5.21 | 1.55 | SAM | | VPFIQQLPDRGCEVTSLAMMLQYAGITVDK---MKLANEIKKVDFM-NDGVRGNPNEGFVGNIYTSG-------------------YGVYHGPLFQLAKKYLNKAVLTGKSIEELYKSVKAGQPVVIITNATFAPLDEFTTWE----------------ITYNEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMGSQAISY-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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