Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | CRRLLTAFAEGSATLSGCLARRARPVRLCQACGGLYRSLLTQYGDIARAVGNSSESHNCAKSILTSDRLQVVVTLSSFFNDTWEAANCANCIKNNSEGLSNSTQEFMDLFNKSLACFEHNLQGQAMDLSPNNYTEVCKNCNGTYKKLNDLYNKLQRLNRHGDESGHSAHLCIDVEDAMNITRKLWSRTFNCSVPCSDTVPVIAVSSFILFLPVVFYLSSFLHSKQKKRILILPKRIQSNASLVN |
1 | 3l39A | 0.09 | 0.07 | 2.78 | 0.81 | SPARKS-K | | FFPLLKQLSDVLSASSVLLVESMERADYYKQIKDMEREGDRLTHLIFDELSTTFITPFDREDIHDLSCMDDVIDGINSSAKRIVIYNP--------RPISESGKELSRLIHEEAINIGKAMDEETFRKNPKPLRDYCTQLHDIENQADDVYELFITKLFEEEKDCIELIKIKEIMHELEKTTDAAEHVGKILKNLIVKYS-------------------------------------------- |
2 | 1cunA | 0.11 | 0.08 | 2.98 | 0.89 | FFAS-3D | | ---MVHQFFRDMDDEESWIKEYGRDLTGVQNLRKKHKRLEAELAAHEPAIQS---VLDTGKKLSDDNTKEEIQQRLAQFVDHWKE--LKQLAAARGQRLEESLEQFVANVEEEEAWINEKMTLVASEDYGDTLAAIFTVHKDRVNDVCANGEDLIKKNNHHVEN---------ITAKMKGLKGKVSDLEKAAAQRKAKLDENS----------------------------------------- |
3 | 1vt4I | 0.15 | 0.12 | 4.14 | 0.47 | HHpred | | -GKTWVALDVCLSYKVQCKMDFKINLKNCNSPETVLEMLQKLLYQIDP---------NWTS---RSDHSSNIKLRIHSIAKAWNAFNLSCKILLTSMTLTPEVKSLLLKYLDCPQDLPREVLT-------TNPRRLSRDGLATWDKLTTIIESSLNVL------E---------PAEYRKMFDRLSV-FPPSA----HIPTILLSLIW-FDV-IKSDVMVVVNKLHKYSLVEKQPKESTISIP- |
4 | 5cwmA | 0.09 | 0.08 | 3.11 | 0.87 | MUSTER | | ELKRVEKLVKEAEELLRQAKEKGSEEDL-EKALRTAEEAAREAKKVLEQAEKEGD----PEVALRA--VELVVRVAELLLRIAKESG--------SEEALERALRVAEEAARLAKRVLELAEKQG-------DPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQ----DPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEARLQERVKELR |
5 | 4gmxC | 0.08 | 0.06 | 2.46 | 0.77 | CNFpred | | QPQQVHTFYKACGIIISEER---SVAERNRLLSDLMQLPNMAWDTIVEQSTANP---LLDSETVK-IIANIIKTNVAVCTSMGAD--FYPQLG-------HIYYNMLQLYRAVSSMISAQVAAEGLIAT---KTPKVRGLRTIKKEILKLVETYISKARNLDD-----VVKVLVEPLLNAVLEDYMNN---VPDARDAEVLNCMTTVVEKVGGVILILQSVF---------------------- |
6 | 1vt4I | 0.15 | 0.13 | 4.26 | 0.99 | HHsearch-2 | | SGKTWVALDVCLSYKVQCKMDFKINLKNCNSPETVLEMLQKLLYQIDP---------NWTS---RSDHSSNIKLRIHSLAKAWNAFNLSCKILLTSMTLTPDVKSLLLKYLDCPQDLPREVL-------TTNPRRLSRDGLATWDKLTTIIESSLNVL------E---------PAEYRKMFDRLSV-FPPSA----HIPTILLSLIW-F-DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS |
7 | 5cwmA | 0.07 | 0.06 | 2.43 | 0.93 | Neff-PPAS | | ELKRVEKLVKEAEELLRQAKEKG-SEEDLEKALRTAEEAAREAKKVLEQAEKEG-------------DPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGD--------PEVALRAVELVVRVAELLLRIAKESG-------SEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEARELQER |
8 | 2axtm | 0.17 | 0.02 | 0.81 | 0.36 | HHsearch | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEVNQLGLIATALFV-LVPSVFLIILYVQTESQQKSS-------------- |
9 | 5cwiA | 0.06 | 0.06 | 2.45 | 0.74 | SP3 | | CKKAESEAREARSKAEELRQRHPDS-QAARDAQKLASQAEEAVKLACELAQEHPNADIAKLCIKA---ASEAAEAASKAAELAQRH--------PDSQAARDAIKLASQAAEAVKLACELAQEHP-------NADIAKLCIKAASEAAEAASKAAELAQRHPDSQAARDAIKLASQAAEAVKLACELA---QEHPNADIAKKCIKAASEAAEEASKAAEEAQRHPDSQKA--RDEIKEASQKAE |
10 | 5cwiA | 0.06 | 0.05 | 2.34 | 0.91 | PROSPECTOR2 | | CKKAESEAREARSKAEELRQRHPDS-QAARDAQKLASQAEEAVKLACELAQEHPNADIAKLCI---KAASEAAEAASKAAELAQRH--------PDSQAARDAIKLASQAAEAVKLACELAQE-------HPNADIAKLCIKAASEAAEAASKAAELAQ----RHPDSQAARDAIKLASQAAEAVKLACELAQEHPNADIAKCIKAASEAAEEASKAAEEAQRHPDSQKARDEIKEASQKACER |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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