Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | SSGTSFVLAAILTVLLFSGMQMYRQWLASSQLHTILGGYLGSVLFILILTAVGNIESIAFGKGFQTKLFPEVAVCLVTALFAAGMIHRVCTTTCLIFSLVALYYINRVSQATHERPAPVYTAPSKKKK |
1 | 5oqtA | 0.08 | 0.08 | 3.07 | 1.03 | SPARKS-K | | ELGAFDLTMLGIGAIIGTGIFVLTGVAAAEHPALVLSFILSGLACVFAALCYAEFASTV----PVSGSAYTYSYATFGE-LIAWILGWDLILEYGVASSAVAVGWSGYFQGLLSGELPKALTSAYDPA |
2 | 3m71A2 | 0.11 | 0.10 | 3.66 | 1.02 | MUSTER | | FRATMGIVLAPAFVCVSAYLSINH---GEVDTLAKILWGYGFLQLFFLLRLFPWIVEKGLNIGLWAFSFGLASMANSATAFYHGNVLQGVSIFAFVFSNVMIGLLVLMTIYKLTKGQFFL-------- |
3 | 6bhpA | 0.08 | 0.08 | 3.11 | 1.00 | SP3 | | GLVISQLLTLAAYVVVTAGAALLQKKANTLTLFDTQEGIDKYTPVYKEVFTATTYIIAYPQQPWIIQFELFVFLLTAACTVFPSIIKRMRPVALTFIASALVLVMDNINAIFFLLRNETAKAVFDDYR |
4 | 3l1lA | 0.11 | 0.11 | 3.95 | 1.00 | SPARKS-K | | IAIYGWLVTIIGALGLSMVYAKMSFLDPSPPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAIQST |
5 | 5ys3A | 0.12 | 0.12 | 4.16 | 0.89 | FFAS-3D | | NPAPLGLMGFGMTTILLNLHNILAMGIFYGGIAQIFAGLFGLTAFTSYGSFWLTLVAILLMPKMAARALQFVFLSLTVLFALLAFVIHVAGWIGLVCGASAIYAMGEVLNEQFGRTILPIGEAHLVPR |
6 | 4pgrA | 0.16 | 0.12 | 3.90 | 0.26 | HHpred | | -GAYVVLEAFGSTFVIFAVLGTIGAKM--KKDLSFLWSFLLVAVLALAVVGIFNI---FSPL---NS-AAMMAYSVI---------------GTIVFSLYILYDLNQIKHRHITEDLIP--------- |
7 | 4lz6A2 | 0.09 | 0.08 | 3.02 | 0.90 | MUSTER | | TVMLGFKVATIFSIGIFALLMLFPEALADREVIQAGVSAMHILFCVTFLIGAQIVAGGLYSLGKPQALILSLSRQIIFLIPLVLILPHWAFPIADVLSFILTVVLLYRDRNVFFLK------------ |
8 | 3rkoB | 0.10 | 0.09 | 3.19 | 0.92 | CNFpred | | TPVSALIHAATMVTAGVYLIARTHGLFLMT--PEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACH--------------- |
9 | 2pffB | 0.13 | 0.11 | 3.77 | 0.76 | HHsearch-2 | | TPDKDYLLSIPISCPLIGVIQLAHYVV-----------------TAKLLFTPGELRSYLKGATGHSQ-------GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILNNEGV |
10 | 3m71A2 | 0.09 | 0.09 | 3.26 | 0.91 | Neff-PPAS | | EPQFRATMGIVLAPAFVCVSAYLSINHGEVDTLAKILWGYGFLQLFFLLRLFPWIVEKGLNIGLWAFSFGLASMANSATAFYHGNVLQGVSIFAFVFSNVMIGLLVLMTIYKLTKGQFFL-------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|