Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LRSMSEILIWGDQNDSSVFDFFLEKNMLLFFLKILRQKTGSYICVQLLQTLNILFENIRNETSLYYLLSNNHVNCIIVHKFDFSDEEVLAYYISFLKTLSFKLNKHTIHFFYNEHTNDFALYTEAIKFFNNPESMVRIAVRTLTLNVY |
1 | 2ynsA | 0.09 | 0.09 | 3.30 | 1.04 | SPARKS-K | | LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG--NKDQIQAVINAGIIGPLVNLTAE---FDIKKEAAWAISNATSGGSHDQIKYLVSEG-----CIKPLCDLLICPDIRIVTVCLEGLENIL |
2 | 4rv1A3 | 0.12 | 0.10 | 3.57 | 1.00 | MUSTER | | --------------PDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASG--PDEAIKAIVDAGGVEVLVKL-LTSTDSEVQKEAARALANIASG-PTSAIKAIVDAG-----GVEVLVKLLTSTDSEVQKEAARALANIA |
3 | 4uaeA3 | 0.08 | 0.07 | 2.97 | 1.03 | Neff-PPAS | | NKEAVWFLSNITAGNQQQVQAVIDANLVPMIIHLLDKG-DFGTQKEAAWAISNLTISG-RKDQVAYLIQQNVIPPFCNL-LTVKDAQVVQVVLDGLSNILKMAEDEAETIGNLIEECG--GLEKIEQLQNHENEDIYKLAYEIIDQFF |
4 | 4rv1A2 | 0.13 | 0.11 | 4.01 | 1.12 | SP3 | | ARALANIAS----GPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIAS--GPDEAIKAIVDAGGVEVLVKL-LTSTDSEVQKEAARALANIASG-PTSAIKAIVDAG-----GVEVLQKLLTSTDSEVQKEAQRALENIK |
5 | 6bcuW3 | 0.12 | 0.11 | 4.04 | 1.04 | SPARKS-K | | RPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPMPAEHRTMTAFILAVIVN--SYHTGQEACLQGNLIAICLEQL-NDPHPLLRQWVAICLGRIWQNF-DSARWCGVRDS-----AHEKLYSLLSDPIPEVRCAAVFALGTFV |
6 | 4plqA2 | 0.08 | 0.07 | 2.66 | 0.94 | FFAS-3D | | --------------GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWTLGNIASG--GNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWTLGNIA-SGGNEQKQAVKEAG-----AEPALEQLQSSPNEKIQKEAQEALEKI- |
7 | 4plqA | 0.09 | 0.09 | 3.30 | 0.40 | HHpred | | -EQILQEALWTLGGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWTLGNIAS--GGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWTLGNIASG-GNEQIQAVIDA-----GALPALVQLLSSPNEQILQEALWTLGNIA |
8 | 4uaeA2 | 0.10 | 0.09 | 3.22 | 1.00 | MUSTER | | --------------GPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVMVNLCR--HKDPPPPMETIQEILPALCVL-IHHTDVNILVDTVWALSYLTDA-GNEQIQMVIDSG-----IVPHLVPLLSHQEVKVQTAALRAVGNIV |
9 | 4b8jA | 0.11 | 0.10 | 3.65 | 0.93 | CNFpred | | LRTVGNIVTG----DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG--NKDQIQAVINAGIIGPLVNLLQ--AEFDIKKEAAWAISNATSGGSHDQIKYLVSE-----GCIKPLCDLLICPDIRIVTVCLEGLENIL |
10 | 2ynsA | 0.06 | 0.05 | 2.41 | 0.48 | HHsearch-2 | | LPCLLSTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSH-DQIKYLVSEGCIKPLCDLL-ICPDIRIVTVCLEGLENILKVGETDKSQMIDE--A---EGLEKIENLQSHDNNEIYEKAVKILEAYW |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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