>PF09751 (398 residues) PATVIDEDDYTDALSHIIARDFFPGLLETQSQQEYLDALESRDREWITEAGRKLTQVMTP GPDGRRARGRRGTSLATPRIAQGTETPRGWGGDTPVSIASDATSVTEIEKKPEVDTNMSL SSFQAKYTSEDNESFNKLLDKQNEKRAQKYAWLWHDNKIPAPRQIAHRQREQKLLEEWKA RESEDGKSQLEITAPDDRPAKPDAWKSRPENQLMFKPDSIEDTHKTVQQAAEEASKAGPK AVIYDNTRLQLHPISADGPRLGSVPPSPSLSAVQDAICGRPRATSTEPGFSGTATPRVNG YAFVDPEPTPAPSNLSDSSWNDYSPLRLGGPIDTTPNPFKIKDKSRREDLHHRMVERVAK NKRKSTPQLGSSPNTPVPKFTSQTRVNPGNLTPAAQRL |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | PATVIDEDDYTDALSHIIARDFFPGLLETQSQQEYLDALESRDREWITEAGRKLTQVMTPGPDGRRARGRRGTSLATPRIAQGTETPRGWGGDTPVSIASDATSVTEIEKKPEVDTNMSLSSFQAKYTSEDNESFNKLLDKQNEKRAQKYAWLWHDNKIPAPRQIAHRQREQKLLEEWKARESEDGKSQLEITAPDDRPAKPDAWKSRPENQLMFKPDSIEDTHKTVQQAAEEASKAGPKAVIYDNTRLQLHPISADGPRLGSVPPSPSLSAVQDAICGRPRATSTEPGFSGTATPRVNGYAFVDPEPTPAPSNLSDSSWNDYSPLRLGGPIDTTPNPFKIKDKSRREDLHHRMVERVAKNKRKSTPQLGSSPNTPVPKFTSQTRVNPGNLTPAAQRL | |||||||||||||||||||
1 | 4ewcA | 0.14 | 0.13 | 4.37 | 1.16 | SPARKS-K | IERSVEFDNFSKEAAANIEASLFIGV--FPALTTFFSALSEGESIWQNGQAIRILALADE--TKLNVVTANGKVKQVEVNKAAFRRPK--RSDYRKGQGSKATESSISNQCALIKSVLSADQLFAKRTNGFNASYTTLAEGANKYLRHRNVALDLGKRIKNSKSKIFSIIQKKVRGRCRTEEQRLLTSALKISDGENKFQRIDTTKFIPPISSLYIQEGNSADFKNGEDACKICREAKLKVGVNST--FTSVSVA---------TAFCSADIIENAVPGSERYKANTTKPKKDSTYTIQGLRLVRYEA-RPEDRSWQVNVTD------SFGGLAVFNQGAIRELVR--ALVKRILKSASERSRAVKTFVGEQGKSAIISGVGLFSIDF---------- | |||||||||||||
2 | 3tnfB | 0.08 | 0.07 | 2.86 | 1.48 | Neff-PPAS | -EELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMST----------------------DPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKFYLLKQGEDWESIKDSPEKQKKAHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK------------------- | |||||||||||||
3 | 5gaoE | 0.10 | 0.08 | 3.00 | 1.02 | PROSPECTOR2 | A----------AAAAA-----------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTKEA-YKKLSQKFHGTKSNKK-------------------------------- | |||||||||||||
4 | 5yfpB | 0.08 | 0.08 | 2.98 | 1.10 | SPARKS-K | SLFSKLLNLENFIKNTTSSSNENPILRWMSIKMNGFQNELNELSGHMISKIIHSQRLILQNNTNQDKSQGCVELSLKINQLFQIISDTGKDKSTVEPNKVNTISGTSYLNLNCQPSSQGTIIEMWLLILKYINDLWKICDQFIEFWEHIEKFLIINEKRLKEEQINEVRLKGEEFITSVSQNLISQSSLPSSLKDSTGDITRSNKDSGSPLDYGFIPPNCPKIVEPILKFSTELAQLN---------------ITTNGITICRNTLSTIINRCVGAISSTKLRDISNFYQLENWQVYETV-------TFSSKSQDSSKNLTFEYGVTQYEKLPIINGISVVSYPSQIISMEAVLEAILKNAAKDKDNPRNSHRECAFPDDAFEWNLASKNLELFSLLS | |||||||||||||
5 | 6em5n | 0.13 | 0.10 | 3.59 | 0.82 | FFAS-3D | -RNFITRSQAVRKLRLCIFKGIYPREPRNKKKANYIQYLMHEPVREHKTFARKLTRAL------------------------------------------GRGEVSSAKRLEENRDSYTLDHIIKRYPS-----FPDAIRDIDDALNMLF--LFSNLPSTNQVSSKIINDAQKICNQWLAYVAKERLVRKVFVSIKNIKGEEVRWLVPFKFPENIPSDVDFRIMLTFLEFYSTLLHPPKLDLKKDKIISGLSSYILESRYDSREVPIDILEFLILSCGGNDSKVTHQIVDRPVLKNKVAGRTYIQPQWIFKGELVPANKYGEALPPHLSPWEEKKLKMIMMSN--KQKKLYKKMKEEQAENLKKKKKQIAKQ-------------------------- | |||||||||||||
6 | 6ecsA | 0.19 | 0.06 | 1.86 | 0.32 | HHpred | ---------SYQLLN-FLPLDFFPDLNALVDTALYEEELTGREHTAIRQALVCWDELTKLIA---------------------------WMS-----S------------------NI-----------TSEQVRTIINDTWGLKVRQSLWFHLSCLTFG----------QHTVQEF----LVSFGV-W--IR---TP-A-----PARPPNAPILS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 6etxG | 0.10 | 0.09 | 3.36 | 0.95 | MUSTER | PKS--IDENQLSRLHMILKPFM-SDKIEISRQKLLYQALKNL--------VMQFRKVCNHPELFERQETWSPFHISLKPYHISKFIYRHGQIRVFNHSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPS--------FLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAA----DWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQ-TRMIDLLEEYMVYRKHTYM-------GSSKISERRD | |||||||||||||
8 | 3bknA | 0.09 | 0.03 | 1.24 | 0.59 | CNFpred | ---MQGDPDVLKLLNEQLTSELT----AINQYFLHSKMQDNWGFTELAEHTRAESFEEMRHAETITDR--------------------LLLDGLPNYQRLFSLRVGQTLRE--------QFEADLAIEYEVLERLKPGIVLCDATSARLLEQILAD----EETHIDYLETQLQLMDKLGDAL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
9 | 4qiwB4 | 0.07 | 0.03 | 1.22 | 0.34 | HHsearch-2 | ------------------------------------------------------NKTLVERDERQ-NK-VVA-KVFS-YRHGY-RALITV--ERK--KD------GILVTIPNVPKPVKFVYVMRALGLLTD---KEIVEAV-----------SDDPRIQQ--VLF-----DNLEDASDI--STQ-EEALYIGR-LALPGQ--PKE---------------YRLRRAEHIIDNN------LLPHMGV----DPENRRAKAY-YL--GMMALKVLELSLGLRGED------------------------------------------------------------------------------------------------------------------ | |||||||||||||
10 | 3cnfT | 0.09 | 0.08 | 2.87 | 1.37 | Neff-PPAS | -------------------------------------------------MWHYTSINNDTRVALDPKPNQIRTITSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVH---------LLHVRSEDNTLRYNWMLGSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWDVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVVQRLIPLSSSTYVQRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYQITADPNILLYPYTYIFTTAYTSMNYISNTGQGRIKHSLAVTGTTEHTIADIT------ | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |