>PF09742 (603 residues) MGNADTKLNFRKAVVQLTSKSQPIDSSDDSFWDQFWSESVTNVQDVFALVPGAEIRALRE ESPNNLATLVYKAVEKLVKTVDSSCRTQREQQTALNCARLLTRVLPYMLEEPEWHGFFWS SLPAASENESVPLAQSLINAVCDLLFCPDFTVASTKRSGPVSIDLLLNRFLIYALISYHM GKCGQPQLTVSIPRRSYLTSSENRHALPLFTSLLNTVCSYDPVGLGLPYNHLLFADTLEP LVEVALQILIVTLDHDTSNTVNEETDESLPDNLFINYLSRIHRDEDFQFALRGVTRLLNN PLAQTYLPNSAKKVNLHQELLVLFWKMCDYNKKFMYYVLKSSDVLEVLVPILYHLNDSRA DQSRVGLMHIGVFILLLLSGERNFGVRLNKPYTATIPMDIPVFTGTHADLLVVVFHKIIT TGHQRLQPLFDCLLTILVNVSPYLKTLSMVASTKLLHLLEAFSTPWFLFSQPHHHHLVFF LLEMFNNMIQYQFDGNSNLVYTIIRKRSVFHSLANLPHEHAAIARSLSAARARPPPPALF NYEQPKQPAIVLCRGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANAGTAAWFRTYM WGV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MGNADTKLNFRKAVVQLTSKSQPIDSSDDSFWDQFWSESVTNVQDVFALVPGAEIRALREESPNNLATLVYKAVEKLVKTVDSSCRTQREQQTALNCARLLTRVLPYMLEEPEWHGFFWSSLPAASENESVPLAQSLINAVCDLLFCPDFTVASTKRSGPVSIDLLLNRFLIYALISYHMGKCGQPQLTVSIPRRSYLTSSENRHALPLFTSLLNTVCSYDPVGLGLPYNHLLFADTLEPLVEVALQILIVTLDHDTSNTVNEETDESLPDNLFINYLSRIHRDEDFQFALRGVTRLLNNPLAQTYLPNSAKKVNLHQELLVLFWKMCDYNKKFMYYVLKSSDVLEVLVPILYHLNDSRADQSRVGLMHIGVFILLLLSGERNFGVRLNKPYTATIPMDIPVFTGTHADLLVVVFHKIITTGHQRLQPLFDCLLTILVNVSPYLKTLSMVASTKLLHLLEAFSTPWFLFSQPHHHHLVFFLLEMFNNMIQYQFDGNSNLVYTIIRKRSVFHSLANLPHEHAAIARSLSAARARPPPPALFNYEQPKQPAIVLCRGLTDESEILRFLQHGTLVGLLPVPHPILIRKYQANAGTAAWFRTYMWGV | |||||||||||||||||||
1 | 4c0oA | 0.09 | 0.08 | 3.08 | 1.19 | SPARKS-K | KTSSNLHEAASDCVCSALYAIENV-ETNLPLAMQLFQGVLTLE---------TAYHMAVADKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAEVVEISFNFYRLGEHLYKTNDEVIHGIFKAYIQRLLHALARHCQLEP----DHEGVPEETDDFGEFRMRVSDLVKDLIFLI------GSMECFAQLYSTPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLPETVHTAVRYTSIELVGEMSEVVDRNP-------QFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVGLLEIARSLDSFLLSAAVGLLKGTALVLARLSELCSVQVMASDPTVFLDRLAVIFRHTADNRIVERCCRCLRFAVRCVGKGQPLVTQMVNVYHVH--------QHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQHPDTVDDLFRLATRFIQPVTLLRSQVVIPILQWAIASLRDLIHTGFELRSQLLHTCCFCPYTLPDVAEVQVDRPTFCRWLENSLKGLVTHKQLTDFHKQVTS------AEECKQVCWALRDFTRLF------------------------------ | |||||||||||||
2 | 2x1gF | 0.11 | 0.10 | 3.68 | 1.66 | FFAS-3D | -----------EAVVSFYRSNSQNHEASPQAWQQLMQLGKSQEVQFFHEVPPENREELKQKILESIVRVLNRLCISLGNTFQNQRSADVQLWIMLEVLTAIPEEAQVIHTSHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFENDNEDIIVHIYMLFVSSVERH--STLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEES-CSTMALAFWYMLQDEVFAHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDNDYILEILAAMLEAIADLQRHPTHWTKLEACIYSFQSVAEHRRLMRVLAEIPYEKLN-------VKLLGTALETMGSYCNW-LMYIPPAINLLVRGLLGLKELCRDCQLQLKPYADPLLNAC--HASLNTGRMKNSDSVRLMFSIGKLMSLRPEEIPKYLDIIV--SPCFEELQAICQATPAARIRTIFSSLNTPVLLVMQRTMPIFKRIAEMWVEEIDEAACSAMKH-AITNLRSQPMLFIVASFQCCAPTLEISKTAI--- | |||||||||||||
3 | 5uflA | 0.19 | 0.08 | 2.57 | 0.34 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACLKSLLLTVSQYK---------------ANATQLLRHLEVIS-----RLFT---------SNQILTSECLSCL-------------VELLEDP-----------SASLILSIIGLLSQLAV-DIETRDCLQNT------LNSVLAGVVCR-TDS----VFLQCIQLLQKLTYN----------------VKIFY-SGANIDELITFLIDHIQS------ELKMPCLGLLANLCRHIKTLSNSFYRTLITLLTVVFALSILSLNEEHARNIHQTFQLIFNILINGDGYSVDLLMDLLKNPKIADYLTRYEHFSSCLHQVLGLLNGK-DPD--------------------SSSKVLELLLAFCSV------------------------------- | |||||||||||||
4 | 2vglB | 0.12 | 0.10 | 3.70 | 1.11 | MUSTER | LNNEKKRKEAVKKVIAAMTVGKDV----SSLFPDVVNCMQTDNLELKKLV-YLYLMNYAKSQ----PDMAIMAVNSFVKDCEDP-----NPLIRALAVRTMGCI------VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGRDLIADSN-PMVVANAVAALSEISSHPNSNLLDLNPQNINKLLTACTEWGQIFILDCLSNYNPKDDREAQSICERVRLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLVTLGEPEVQYVALRNINLIVQKR---------PEILKQEIKVFFVKIYVKLEKLDIMIRLASQANIAQVLAELKEYAT-----EVDVDFVRKAVRAIGRCAIVEQSAERCVSTLLDLIQTKVNY----VVQEAIVVIRDIFRKYPNKIATLCENLPDARAAMIWIVGEYAERI-DNADELLESFLE----GFHDESTQVQLTLLTAIVKLFLKKPSE------TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAEVVLSEKPLISEETDLIEPTLLDELICHGSLASVYHKP-----------------PNAFV--- | |||||||||||||
5 | 3m1iC | 0.10 | 0.08 | 3.04 | 1.65 | CNFpred | ---------FIPELIGSSSSS-------VNVCENNMIVLKLLSEEVFD-MTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-----SSSLIVATLESLLRYLIPYRYIYETNILELLSTKFMT------SPDTRAITLKCLTEVSNLK----------PQDNDLIKRQTVLFFQNTLQQIATSVMPVTA---DLKATYANANDQSFLQDLAMFLTTYLARN-------RALLESDESLRELLLNAHQYLIQLSKIEERELFKT-------LDYWHNLVADLF-KHIYEEICSQLRLVIIENMVRVLVVEIVREFVKESDTIQLYKSEREVLVYLTHLNV--IDTEEIMISKLARQIDG--SEWSWHNINTLSWAIGSISGEKRFVVTVIKDL-LDLTVKKR--GKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVKYHFVIQQPRESPFIQTIIRDIQKTTADLQPQQVHTFYKACG-NRLLSDLMQL--PNMAWDTIVEQSTANPTLLLDSETVK-------------IIANIIKTNVAVCTS-----------MGADFYPQLGHIYYNMLQLY | |||||||||||||
6 | 1vt4I | 0.14 | 0.12 | 3.99 | 1.17 | HHsearch-2 | MDFETGEHQYQKDILSVF---------EDAFVDNFDCKDVDMP---KSILSKEEIDHIIMSKVSGTLRLFWTLLSKQEEM---------VQKFVEEVLRINYKFLMSPIKTESMDRLYNDNQVFA-KYNVSRLQPYLKLR-QALLELRAKNVLID---GVGSGKT----WVALDCLSYKVQ---CKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQID---P-NWTSRSDHS----SNIKLRIHSIQALRRLLKSKPYENCL--LVLLNVQNA--KAWNAFKQVTDF------------LSAATTSLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDHVNCDKLTTIIESSLNVEPAEYRKMFDRLSV-FPP---SAHIP------TILLSLIWFDVIKSDVMV--VVNKLHKYSLVEKQPKESIPSIYLELKVKL---------ENEYALHRSIVDHYNIPKTFDSYLDQYFYSHIGHHLKNIEHPERMFLDFRFLEQKI--RHDSTANASGQKFYKP---YICDNDYERLVNAILDFLPKIEENLICS-KYTDLLRIALMAEDEAIFHKQVQRGG | |||||||||||||
7 | 2vglB | 0.11 | 0.10 | 3.56 | 1.51 | Neff-PPAS | --KKEKRKEAVKKVIAAMTVGKDV----SSLFPDVVNCMQTDNLELKKLV-YLYLMNYAKSQPDMAIMAVNSFVKDC---------EDPNPLIRALAVRTMGCI-----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN----AQMVEDQGIADSNPMVVANAVAALSEISSHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP----KDSDYYNMLLKKLAPPLVTLLSPEVQYVALRNINLIVQKR-----PEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK--------VNYVVQEAIVVIRDIFRKYSLDEPDARAAMIWIVGEYAERID----NADELLESFLEGF--------HDESTQVQLTLLTAIVKLFLKKPSE------TQELVQQVLSLATQDSDNPDLRDRGYIYWRLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKP----------------PNAFV--- | |||||||||||||
8 | 1vt4I | 0.09 | 0.07 | 2.82 | 1.18 | HHsearch | AKYNVSRLQLRQALLELRP-AKNVLLGSGKTWVALDNLKNNSPETVLEMLQ--KLLYQISDHSSNIKLRIHSIQAELRRLLKSKYELNVQNAKAWNAFNLSCKILL-TTRFTDFLSAATTTHISLD-HHSMTLTDEVKSLLLKYLDCRPQDLPREV------LTTNPRRLSIIA-ES-IRD---GLAT-----WDNWKHVN-CDKLTTIIESSLNVL-E--PAEYRKMFDLVFPPSAHIPTILLSLIWFDVLHKYSLVEKQPK-ESTISIPSIYLELVKLENEYALH----RSIVDHYNIPKTFDSDD---LIPPYLDQYSHIGHHLKNIEHPERMTLFRMVFLDFRFEQKIRHDSTA-WNASGNTLQQLKFYKPYICDNDPKYERLVNAILDF-LPIEENLICSKYTDLLRIALM---AEDEAIFEEAHKQV----Q------RGGGGGG-------------------GGGGGG-----------------GGGGG---------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGG- | |||||||||||||
9 | 2bkuB | 0.10 | 0.09 | 3.47 | 1.58 | PROSPECTOR2 | MSSPDQNIQFAGLSSQVLIDENTLVSKDSVKTQQFA-------QRWITQVSPEAKNQIKTNIEPRIANAAAQLIAAIADIELGAEQPENVKRASLLALNILIAIVQGAQSTETSKAVRLALIFIKNNMEREGERNYLMQVVCEAT-------------QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFPDKVQRTYYVHQALPSILNLMNDQSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWPSPIYNFYPALVDGLIGAANRIDNEFNARASAFALTTMVEYTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAASVEPVADMLMGLFFRLLDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMN--VLAQMISNPNARRELKPAVLSVAAQNTKPENGTLEALDYQIKVLEAGLHDKPETIFQFIAQVAEDPQLYSEPDGSIKQFYGQDWVIDYIKRTQLSL | |||||||||||||
10 | 3kk4A | 0.10 | 0.01 | 0.43 | 0.19 | SAM | -RANQRSYSVQARSLRLHGVATSVRL-EQLFWDVLEEIAARDG-RVTQLIERLYDELVQYGEAANFTSFLRVCCLR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |