>PF09658 (377 residues) MSWVVMDAGIEPDEEELADTLEGALKSLGSRVKIHTSKMGRNDRSSFDKVLKAWFGRSAP ETYGELFELVVTETIKLLRDGNIDPGESLSTIKTDKNGTYLGIAYNGEQAILPAIIKQPE YYERQSGFLSPTTGQKAQIRMDPLWFSFMALGFFTSFAGFIGGKYYLMTKPGIEVFWPYE VEEIIEKGILPLTGAGASGRISLSTEELYEMKLAMKLAEEGRDVIEEVYPVTLHLISLEG QVYTELKTTQLNLTGLSEYMEEYVNRIESASMGGLPILVELKAGNATIQKYPLWALVDIA ERELWKGVNGDGEMLAYIFVKDLYRAINSGRRELIRDAVFRLFRQGRALLEGSGRASGEF RKVMKTFMWQEHLEVLL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MSWVVMDAGIEPDEEELADTLEGALKSLGSRVKIHTSKMGRNDRSSFDKVLKAWFGRSAPETYGELFELVVTETIKLLRDGNIDPGESLSTIKTDKNGTYLGIAYNGEQAILPAIIKQPEYYERQSGFLSPTTGQKAQIRMDPLWFSFMALGFFTSFAGFIGGKYYLMTKPGIEVFWPYEVEEIIEKGILPLTGAGASGRISLSTEELYEMKLAMKLAEEGRDVIEEVYPVTLHLISLEGQVYTELKTTQLNLTGLSEYMEEYVNRIESASMGGLPILVELKAGNATIQKYPLWALVDIAERELWKGVNGDGEMLAYIFVKDLYRAINSGRRELIRDAVFRLFRQGRALLEGSGRASGEFRKVMKTFMWQEHLEVLL | |||||||||||||||||||
1 | 5sujA | 0.15 | 0.12 | 4.19 | 0.64 | SPARKS-K | KLKSSQSYGVTVPAEVLGQQAERSIPSI--------NKTG-NLKQQIAKEVSKVCHTEPTQSCGQASNDVCELLLEKFHFTKYEAKNVLENTAPSSTNLLIRFEIDREDPPVLVKTKN-------ENF-NPETAVKNKIYLLE-------------------NKLYFIDKGNLFNLGPGKCTQLFNA----IGDSEYSLCDEPEKPEDFAISEIVDIFNEQKDFWIGSHSFTIYIPQTLGQFYPYQAYFGSHT--LQDWFVS--DKDEYLSRIGI--------------DKYIEKLAVLGKT-------TNTKERSDIYAEFFS---KRGREEINPELALKNLQETQEFIDTPGENPSDKVENYRNRAKLEHLESLL | |||||||||||||
2 | 3iygQ | 0.12 | 0.11 | 3.77 | 0.81 | FFAS-3D | -----LRLGLSVSIEGYEIACKKAHEILPDLVC--CSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKEELMNFSKGEEMDAQVKAIAGANVVVTGGRVADM-----------ALHYANKYNIMLVRLNSKWDLRRLCKTVRLNPPVLEEMGHC--DSVYLSEVGDTQVVVFKTIVLRMDDIERAVDDGVNTFKVL----------TRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFALAENSGVNEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLD------- | |||||||||||||
3 | 1t11A | 0.15 | 0.12 | 3.94 | 0.36 | HHpred | ----QRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK-------AVRQDVLGEVMQRHIEAIVKEKINPAGAFAPVEIGEGK---DLVFTATFEVYPEV-ELKGLLRKQQATWKEVAAENGKRSID--------------FVGSIDGVFPLEMGA--GRMIP-GFED----GIVGK-TKGMEFVIDVTFPEDYHA---ENLK-----GKAAKFAIKVNKVEA--RELPELARFGVGVDALKAEVRKNMERELKQARIKEQAIEGLVKEN-EI-QVPS-ALIDQEINVLRQGGN-------VE--AA----AQLPRELFEEQAKRRV-VV---------------GLLLGEVIRTHELKAD- | |||||||||||||
4 | 5azaA1 | 0.13 | 0.12 | 4.23 | 0.61 | MUSTER | GKLVIWINGDKG-----YNGLAEVGKKFEKDTGI---KVTVEHPDKLEEKFPQVA--ATGDGP--IIFWAHDRFGGYAQSGEITPDKAFQD-KLYPFTW--AVRYNGKLIAYPIAVEAL-IY---KDLLPPKTDKELKAKKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNTDYSIAEAAFNKGETA-AWSNIDTSKVNYGVTVLTFKGQPFVGVLSAGINAALAKEFLENYLDEGLEAVNKPLGAVA-LKSYEEELVKDRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS-GRQT-VDEALKDAQTRIAAAKAEAAAKAEAAAKAAAAWEDALKWLREN | |||||||||||||
5 | 3j02A | 0.13 | 0.11 | 3.71 | 0.92 | CNFpred | -------------PTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKAEKAKEKLAEIIVEAVSAVVDDEGKV---DKDLIKIEK---KSGASIDDTELIKGVLVDKERVSAQMPKKVT-----DAKIALLNCAIEEMLKDMVAEIKAS--GANVLFCQKGID---DLAQHYLAKEGIVAAR--------RVKKSDMEKLAKATGANVIDLSAQDLGDAGLVEERKISGDSMIFVE-VTMLIRGTEHVIEEVARAVDA----------------------AVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAG | |||||||||||||
6 | 1vt4I | 0.16 | 0.15 | 4.97 | 0.60 | HHsearch-2 | LFWTL----LSKQEEMVQKFVEEVLRFLMSPIKRQPMYIEQRDRLYNDNQVFAKYNVSRLQPYLK-----LRQALLELRPAKLDVCLSYKQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHKLRIHSIQAELRRLLKSKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLL---LKYLDCRPQDLVLTTNPRRLSIIAESIR---DGLATWDNWKCDKLTTIILELSVFPPSAHIPTILLSLIWFVMVVVNKLHKYSLVEKQPKIPSIYLELKVKLENEYALHRSIVDHIPKTFDSDDQYFYSHIGHHLKNIEHPERMTLFRMVDFRFLEQKIRHDSTAASGSILNTLQQLKFYKPYICDAIL | |||||||||||||
7 | 2jdqB | 0.12 | 0.11 | 4.05 | 0.70 | Neff-PPAS | ---DMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTNCTLQFESAWVLTNSGNSLQTRIVIQAAVPIFIELLSSEFEDAVWALGNIGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP------NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN--IFPALISLQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ | |||||||||||||
8 | 1t11A1 | 0.11 | 0.03 | 1.06 | 0.34 | HHsearch | MQVLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK-------AVRQDVLGEVMQRHIEAIVKEKINPAGAFAPVEIGEGKD---LVFTATFEVYP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
9 | 3aq1B | 0.15 | 0.12 | 4.21 | 0.85 | SP3 | EE--LIMKGV--HSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVLENIKIEK---RAGGSIDDSELIDGLVIDK--------ERSHPNMPEKLSCPVEFKMMREMAEKVIAS------GANVVFCQKGID-----------DMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGIQDLDQITTEDVTAGLVEEKEVRGGKMTYVTGCQ----------------------NSKAVTVLLHGGTEHVLDHALNDALHVVGVVIEDGVVGGGEVELSLRLSEYASTLKG-----REQLAVSKFAEAVALAENAGLDPIDIMVELRSQHEKGNKNAGL | |||||||||||||
10 | 3tnfB | 0.13 | 0.11 | 3.95 | 0.93 | PROSPECTOR2 | LDERAQENIKKGEEERQGKDLEDKYKTYEENLEGFEKLLTDSESKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEK---GNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHK------LSLEMEKQLETINNLIMSTDPKENEEATKLLHKLQDMLAVHRKEKSFFNEKGEEVQQLFNLGGKFYPIHKEQKI--------------------LEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMT-----VKKLVHHNKGLETTIHKERVEETKQQ---------------LEDNGKEKIEIANNISK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |