Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | LVADLSNHLIAINTGFVGTEVVLFGATDGPGDVAVVVQGPPTEVMVRRKSRVAGIWINTASMEFQQAPSFYSVATNRPLDQIIGDAVLARHEIGLAHLRLPPLTPARASPERVREFREALIRNKQEEGLYGKTHGQVAFLGERLFRTNVYFPANVPTGAYTVSVFLIRDGDVVSAQTTPLAVSKVGFSAEIFEFAMRQSTFYGISAIIFAVAAGWLAGAIFRK |
1 | 4dvyP | 0.10 | 0.09 | 3.49 | 0.74 | SPARKS-K | | SFIFALSSVLMGSHNGIEKVSLLYAGFGDKHDWNATVGYKNVATLINHMKNGSGLVIAGGEKGINN-PSFYLYKLTGSQRALSQEEIRNKVDFMEFLAQNNTKLD-NLSEKEKEKFQNEIEDFQKDSKAYLDGNDRIAFVSKKALITEFNN------GDL---SYTLKDGVMFVDYSNKVAVFNLPVRRNLENKLTAKGLSEANKLIKDFLSSNKELAGKALN |
2 | 1pu5A | 0.15 | 0.09 | 3.19 | 0.64 | FFAS-3D | | -SLTLEPDPIVV-----PGNVTLSVVGSTSVPL-----SSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTF------EHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFK-----------------EGTYSLPKSEFVVPDLE-------LPSWLTTGNYRIESVLSSSGKRLGCIKIAASLKGI-------------------------------------- |
3 | 5l7rA1 | 0.13 | 0.09 | 3.12 | 0.46 | HHpred | | -----TDIRYKKEEPAAQKSMNLTAWKGEKISAQLVVWTPKNDLTFMVSDLTSKENIRTGFVRYVIELNKDGGCGYRNS------------------ADFDSTLV--ADVIDH------------------IT-PTLTLPATQGGWISVNIPQGTKAGKYTGTVTVKADGITLSELKLNLQVKNRTLPPPSYAVSRYYNV----------------------- |
4 | 1lpfA1 | 0.15 | 0.13 | 4.37 | 0.74 | MUSTER | | ------------SQKF---DVVVIGAAQLGLKTACIEKYIGKEGKVA----LGGTCLNVGCI-----PSKALLDSSYKYHEA--KEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGV-TSFEGHGKLLANK--QVEVTG-LDGKTQVLEAENVIIASGSRPVEGRRPLLAADSGVTLFI-HCKTSVPGVFGDVVAHKASEEGVMVAERIAG |
5 | 5l7rA | 0.10 | 0.08 | 2.96 | 0.81 | CNFpred | | -------------------SMNLTAWKGEKISAQLVVWTVLNDLTFMVSDLTSGATISKENIRTG-FVRYVITDELNKDGLGACGYRNSAD-------------------FDSTLVADVIDHIT----------PTLTLPSTQGGWISVNIPQGTKAGKYTGTVTVKADGITLSELKLNLQVKNRTL-QNPYAVSRYYNVHFDLMRPLMKLYADAGGKVITAS |
6 | 1pu5A | 0.17 | 0.11 | 3.52 | 0.55 | HHsearch-2 | | RSLTLEPDPIVV-----PGNVTLSVVGSTSVPL----SSPKVDLVLEK--EVAGLWIK--------IPCTDYIGSTEHFCDVLDM----LIPTG-------EPCP------------E-PL---RTYGLCPFKEGTYSLPK-SEFVVDLELPSWLTTGNYRIESVLSSSGKRLGCIKIAASLKGI-------------------------------------- |
7 | 3tmgA | 0.09 | 0.08 | 3.10 | 0.68 | Neff-PPAS | | ---------YNAEIFSVTTSIMYQYLASGKIDGTVSSWVPTVDLGANYEGTIQGFVVPSYKGKGDKFKNKMIGIDAGAGTQIVTEQALNYYGL---------SKEYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDDPDLIMGGIESVHTLVRLGDFDAYYVFDHFYWSDDLILPLMDKNDKEPRNAVEFVEKNKEIVKTWVPEKYKTL |
8 | 2b39A7 | 0.08 | 0.04 | 1.41 | 0.66 | HHsearch | | -------------------YLFIQTDK--------------------------TIYTPGSTVLYRVFT----VDKLLPVG---------------QTVFITIET---PDG----------------IPVK---RDSKSSNQFGILTLSWNIPELVNMGVWKIKAYYE--DSPQQVFSAEFEVKEYV------------------------------------- |
9 | 2ag2A | 0.17 | 0.11 | 3.56 | 0.71 | SP3 | | RSLTLEPDPIV-----VPGNVTLSVVGSTSVPLS-----SPLKVDLVLEKEVAGLWIKIPCTDYIG---------SCTFEHF-CDVLDMLIPTGEPCPEPLRTYGLPCHCPFK-------------EGTYSLPKSEFVVPDLEL-------PSWLTTGNYRIESVLSSSGKRLGCIKIAASLKGI-------------------------------------- |
10 | 1jjfa | 0.11 | 0.10 | 3.58 | 0.71 | PROSPECTOR2 | | LPTMPPSGYDQVRNGVPRGQVV---------NISYFSTATNSTRPAR-------VYLPPGYSKDKKYSVLYLLEGGGRANVIADNLIAEGKIKPLINTNAAGPGIADGYENFTKDLLNSLIPYIESNYSVYTDREHRAITNLDKFAYIGPISAAPNTYPN--ERLFPDGGKAAREKLKLLFISLIGFGQRVHEYCVANNIDFNVWKPGLWNFLQMADEAGLTR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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