Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | VKVPLGNVFGSQLLAQYGPKIDIKVTPIGMVNVDFKTQFEQSGINQTRHKIYLVVNTQVRIIVPFSSNTTSVETSVPIAETVIVGKVPQ |
1 | 4indA2 | 0.15 | 0.15 | 4.90 | 0.87 | SPARKS-K | | QSVTLSSILNVQ---GSGSHLRLKYASVSQCQLQATNLNRSTTYSTVWDFIIREINS-IQLVANGGSSTSSVTITLILVYEQIAGELSH |
2 | 1fx3B | 0.13 | 0.10 | 3.49 | 0.58 | FFAS-3D | | ------------------PVLQIQRIYVKDVSFEFDLSTETTQVGDDLYEVVLNISVETTL---EDSGDVAFICEVKQAGVFTISGLED |
3 | 4zwjA | 0.19 | 0.12 | 3.98 | 0.25 | HHpred | | -------------------------ALDGKIDTNLSSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLTSSEVATEVPFRLMH------- |
4 | 4indA2 | 0.17 | 0.17 | 5.55 | 0.79 | MUSTER | | VTLSGSQVTQSILVQGSGSHLRLKYASVSGLTTAVTQCQLQAGGSSTPPSWDIREINSIQLVANGGSSTSSVTITLILVYEQIAGELSH |
5 | 5wd6A | 0.10 | 0.09 | 3.31 | 1.00 | CNFpred | | ETENFLEQLISRIFQVVSRLTGVRIRNVQ--VPDITMEATSE----NSANVLIPITADVTVSLPFLGEIVDLDLNVDLQTTVSIE---- |
6 | 5js4A | 0.16 | 0.15 | 4.84 | 0.49 | HHsearch-2 | | IDVDGSSLQGKTAFINCGPTIQN-LTARCNGAGKQVSFIEIDGYLANIDHITLNFYNQIVV------KQALVGFNF--TNAWLYYSDPL |
7 | 2tbvC2 | 0.09 | 0.09 | 3.39 | 0.90 | Neff-PPAS | | ---GYLVLTRTPTVLTHTFRATGTFNLSGGLRCLTSLTLGATGDILAIDNVGTASDYFLNCTVSSLPATVTFTVSGVAAGILLVGRARA |
8 | 2jr3A | 0.24 | 0.11 | 3.49 | 0.28 | HHsearch | | DDTP-SSRCG---SGGWGPCLPIVDLCIVHVTVGCSGGFGCCRIG-------------------------------------------- |
9 | 5er0A1 | 0.15 | 0.13 | 4.54 | 0.78 | SP3 | | VTV-VGC--THKQILAEHPDAEVTVYERNDLFYSSPEELQKLGANHNVLAIDPD-QKTVTVEDLTNHAQTTESYD-----KLVMGSRPN |
10 | 2k5vA | 0.09 | 0.08 | 3.00 | 0.51 | PROSPECTOR2 | | MNYK---------ISELMPNLSGTIN--AEVVAAYPKKEFSRKDGTKGQLKSLFLKGSIRGTLEVKKGDIYVKQGISVDNIGIIEKSLE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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