Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | RKIYKTGQTRGASQNEIYQNRVSRNSTVLIPYQWWEKCKEPYPGAEYENGFIVLIDPDWYSDHPHADKTLAAKGIVLGVNAVLHFQQRAQWDRYDLRLGDLLPNGMPFTEPTQRISPIGGTVLARIHGTTAEGDKRSQIRVGFNETNLRGAGIRVYEYASTENLEKTRLQLESYYWLAEESLEMAIDWGMSPKDARKRRDETLQHAHEAGLLEYQRLQAVRIVDEHNVTICPFCLERISASTFYERSEQAVGRETWDLTTTEISLFHIEELRVGALQHRPYNLGWGHH |
1 | 4l0kA | 0.15 | 0.07 | 2.45 | 1.47 | HHsearch-2 | | ----------------------------------------------------------------------------------------------------MELCHK---TVKSRYSKHFPHKCQLPLGHSGKCLEAAKIKFNLDMQSLPELKIREK-AADYDSCIDVARKLTWLAYQLHGAPI-------PDSF-------TKNYLEEF----------FGPM-VAGSTNCEICKLPLTIDLFSEA---------------AVETAHKTPR-----LHNAENVGFAHR |
2 | 4l0kA | 0.15 | 0.07 | 2.44 | 1.88 | HHsearch | | ----------------------------------------------------------------------------------------------MELC------HK---TVKSRYSKHFPHKCQLPLGHSGKDDD--ILKFNLDMQSLPELKIREK-AADYDSCIDVARKLTWLAYQLHGAPI-------PDSF-------TKNYLEEFF----------GPM-VAGSTNCEICKLPLTIDLFSEA---------------AVETAHKTPR-----LHNAENVGFAH- |
3 | 4fyeA2 | 0.13 | 0.10 | 3.61 | 0.72 | SPARKS-K | | EPVPNQHLAYGYPGEQVFKDPMLDGKQVVVVNS--QYDKHGRPVTG-RDTLIHRFKA------PNSKE---------GEEQFIMYIPTKRQQRL------MGKDESDLVLGNS----SMARMIAGTRH---SDGTVTIHHDSFSGP-----GARMPDFADDYKKLAIKAVTLINQEEVIQTLAQRQIDRMTNEDLWNRAQLIKLYVEHNPL---------------SVTECVTAGQRVNQKEQFEYVRQMMG------SKAKITIQTGSNTEVEAVGYQARMSSWGVN |
4 | 1tjlA | 0.16 | 0.06 | 1.84 | 0.52 | FFAS-3D | | ------------------------------------------------------------------------------------------------------------------------------------------------------------EYMNEAQLAHFRRILEALRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIVEDEDFGYCESCGVEIGIRRLEKTLAEIREKQ---------------------------------- |
5 | 4l0kA | 0.15 | 0.07 | 2.33 | 0.80 | HHpred | | ------------------------------------------------------------------------------------------------------------KTVRTAYSKHFPHKCQLPLGHSGKDDD--ILKFNLDMQSLPELKIREK-AADYDSCIDVARKLTWLAYQLHGAPI-------PDSF-------TKNYLEEF----------FGPM-VAGSTNCEICKLPLTIDLFSEA---------------AVETAHKTPRL-----HNAENVGFAHR |
6 | 3ed3A | 0.12 | 0.09 | 3.33 | 0.54 | MUSTER | | ---------HNDSDPHIFDKAINTNYTSLVEFGHCKKLSSTFRKKRLDGVVQVAA-----CDLNKNKALCAKYDVN-GFPTLMVFRPPKI-EVYARTLAPIVD-LSRIRSYVKKFVRID-TLGSLL-----RKSPKLSVVLFSKQDKIS------------PVYKSIALDWLDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKL----VVADKDKFW-----NSINKNDISKFLRDTFSITPNEGPFSRRSEY-IAYLKTGK------------- |
7 | 4a15A | 0.13 | 0.08 | 2.75 | 0.60 | CNFpred | | ------------------------------PYESMKAA--------LPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAH--------NLPDIGR--------------SIGSFRISVESLNR-AYGDPELSQKIH---------------VSDLIEMIRSALQSMVS-FQEFMEYMRIMNRSEREIRSLLNYLYLFGEY----VENEKEKV-----GKVPFSYCSSVASRIIAFSDQD-----------EEKYAAILSPE------------------- |
8 | 1vt4I3 | 0.08 | 0.04 | 1.49 | 0.66 | HHsearch-2 | | ------------------------------EYALHRSIV--------------------------------------------------DHY--------------------------------NIPKTFDS-------------DDLIPP--YLDQYFYSHHLKNEHPERMTLFRMVFLDFRFLEQSGSILNTLQQLKFYKPYICDN-----DPKYERLAILDFPKIEENLICSKYTDLLRI---ALM--------------------AEDEAIFEEAHKQVQRGGG |
9 | 3tnfB | 0.09 | 0.09 | 3.44 | 0.87 | Neff-PPAS | | QENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSPKENEEATKLLHKHNGLNLANLQDMLAVHRKEKSFFNEKGEEVSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFGEDWESIKDSPE |
10 | 5goxA | 0.15 | 0.07 | 2.45 | 0.53 | HHsearch | | ---------------------------------------------------------------------------------------------------------------------------KEINQ----------TRD-----RLAKL---NKELASEQNKNHINNELKRKEEQLSSYEDKLFVCGSQESDLDRLKEEIEKSSKQRA-LAGATAVYSQFITQTNQSCCPVCQRVFQTEEVISDLQSKLRL-APDLKKKEKRRDE-LGLVP-RQSIID--LK-EK- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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