Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LTFSALLVAIGVMAGNIIYIPVGAAKCFPVQHTINVISGVLLGPWYAVANAFLVSLLRNMLGTGSPLAFPGSMIGAFLAGALYLKLGKKSWAVLGEIFGTGILGGLLAFPIAKLILGKDVAAFYFVIPFLISTIGGSIIGYSILKVMER |
1 | 5d0yA | 0.19 | 0.18 | 5.87 | 2.83 | SPARKS-K | | LVLLAMVIAIKVVLGQ-FKVGD-ATLQVGLGFIGSVMLGYLFGPWWGFAGGALSDLVSSAIFGNFIGFTLTAALESMIYGFFLYKKPQIWRVIASVICVTVICYIGLNTLWVSMLTNFMVALSSRILKEMITPWIHMVVVWFILEGL-- |
2 | 4hzuS | 0.16 | 0.16 | 5.34 | 2.20 | FFAS-3D | | NTIAAVLIAMTVALSILVVIPIPAKGIVTLCEVGIYTSAILYGRRMGLLVGGASGFLIDILTGYPLFSLVIHGTQGLVVGWLLPRHHKGIRSMLLPLLVGSLVMVIGYCLATTLLFG-WPAGLASIFGNVVQVGFGAGVTLSIVGPLTR |
3 | 5kbwA | 0.17 | 0.17 | 5.52 | 1.44 | HHpred | | ISFVGIFSALATLVMFL-EFPIASFLKYDPSEIPALIVSFLLGPGVGMFVVLVKDILFFLMKSGDPVNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFFALGLNALIVPLYFEAPKFFPFILAFNLVKFGIDSVVTFFVYKKVSS |
4 | 4z7fA | 0.16 | 0.16 | 5.34 | 2.08 | MUSTER | | IALMGVLIAVVVVFSRFFAYET-TFLKISFTFIPESLIGMIFGPFWAGIGTAVADVVGMLLFPYFPGFTLNAFLAGAIYGYFYYKKMTWQRVILATLLVTVLINIILTPLWLSLMYGVNLANFAWWVPRLIKTVIFFPIQVIATYYLGN |
5 | 3rkoC | 0.12 | 0.12 | 4.25 | 1.16 | CNFpred | | VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQL--AYQGAVIQMIAHGLSAAGLFILCGQLYERIHT |
6 | 5d0yA | 0.19 | 0.19 | 6.05 | 2.06 | HHsearch-2 | | LVLLAMVIAIKVVLGQ-FKVGD-ATLQVGLGFIGSVMLGYLFGPWWGFAGGALSDLVSSAIFGNLGGFTLTAALESMIYGFFLYKKPIIWRVIASVICVTVICYIGLNTLWVSMLGGTNVALSSRILKEMITPWIHMVVVWFILEGL-- |
7 | 4hzuS | 0.17 | 0.17 | 5.52 | 2.32 | Neff-PPAS | | NTIAAVLIAMTVALSILVVIPIPATKGITLCEVGIYTSAILYGRRMGLLVGGASGFLIDILTGWCLFSLVIHGTQGLVVGWLLPRHHKGIRSMLLPLLVGSLVMVIGYCLATTLLFG-WPAGLASIFGNVVQVGFGAGVTLSIVGPLTR |
8 | 5d0yA | 0.21 | 0.20 | 6.41 | 2.78 | HHsearch | | LVLLAMVIAIKVVLGQ-FKVGD-ATLQVGLGFIGSVMLGYLFGPWWGFAGGALSDLVSSAIFGNGIGFTLTAALESMIYGFFLYKKPIQIWRVASVICVTVICYIGLNTLWVSMLGGTNVALSSRILKEMITPWIHMVVVWFILEGL-- |
9 | 4hzuS | 0.16 | 0.16 | 5.34 | 1.36 | PROSPECTOR2 | | NTIAAVLIAMTVALSILVVIPIPATKIVTLCEVGIYTSAILYGRRMGLLVGGASGFLIDILTGYPVWSLVIHGTQGLVVGWLLPRHHKGIRSMLLPLLVGSLVMVIGYCLATTLLFG-WPAGLASIFGNVVQVGFGAGVTLSIVGPLPD |
10 | 4huqS | 0.13 | 0.13 | 4.42 | 0.88 | SAM | | MVTMGVLMALQLVISR-FSVG-NNFIKVSFTFLIVALIAKWFGPWWGMLTAAVVDVIGTLMTG--GPFFIGFTVGSLIYAVFLYRQPSWWRVIGASVLIALLVNTLLNTLWVTIMYQTPSLLPVRALKELIVTPVQIVLVYLLLKSQVI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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