Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | LEAFQDFEKKGKKETCPVLEQFLCHVAKTGQPLIPWSQFKTYFMFKLEKVMDDFHASTPEQRGPHNPNVEYVPFEEMKTRILKIVDGYNGIPFTIQRLCELLVDPKRNYTGTDKFLRGLEKNVMVVSCVYPTSEKNGASSVNRMNGVMFPGNSSLYSDSRNVNGPGTPKPLTRPKLSLATSLSTNGLPDCPGSKEPEPTTEEVEEHHISDSSLSEGELTPNSGIKNKHPEDEEEEEEDSDADKQEVKRLKFDEKEEDETESEEK |
1 | 5mqfM | 0.07 | 0.07 | 2.81 | 0.68 | SPARKS-K | | ETAVRGYRRFLKLS-PESAEEYIEYLKSSDRLDEAAQRLATVVNYQLWHELCDLISQNPDKVQSLNVDRFTDQLGKLWCSLADYYIRSGHFE-KARDVYEEAIRTVMTVRDFTQVFDSYAQ-------FEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVAQGRPREIINTYTEAVQTVDPFKATGKPHTLWVDNGQLDDARVILEKATKVNFKQVDDLELRHENYDEALRLL |
2 | 2x1gF1 | 0.20 | 0.07 | 2.18 | 0.64 | FFAS-3D | | -EAVVSFY-RSNSQNHEWLTDAAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPEN-----------REELKQKILESIVRFAGGPIVLNRLCISLG----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
3 | 5yjeA | 0.17 | 0.05 | 1.62 | 0.35 | HHpred | | --------LQSSHEYRHWLLVYARYLVNEG------------FEYRLREICKDLLG-------PWESTVVGLRKRELLKELLPVIGQNL----RFQRLFTECQEQLDIL----------------------------------------------------------------------------------------------------------------------------------------------------------- |
4 | 6d4hA | 0.09 | 0.09 | 3.44 | 0.85 | MUSTER | | SRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALLQHLDSALQASRVHVYMYNRQWKLSGELITETGYMDQIIEYLYPPLDCFWEGAKLQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRT----VEVVHQSVAQN |
5 | 4c0pA | 0.06 | 0.02 | 0.99 | 0.61 | CNFpred | | SFWLGELQRS------VHAWEISDQLLQIR----QDVESCYFAAQTMKMKIQTSFYELPT-----------DSHASLRDSLLTHIQNLKLSPVIVTQLALAIADLALQMPSWKGCVQTLV------------------------------------------------------------------------------------------------------------------------------------------------ |
6 | 2pffB | 0.18 | 0.17 | 5.55 | 0.61 | HHsearch-2 | | NLCLTEFENC-YLEGNDIHALAAKLLQENDTTVKTKELIKNYITARIMAPFDKKSNSALFRAVEGNAQLVTDDFEELRDLLIKILEWDKDYLLSIPISCPLIGVILAHYVVTAKLLRSYLKGATGHSQLVAVAIAETDSWESFFVSVRKAITVLFFIGVRYEAYPNTSLPPSILEDSLSPMLSISNLTQEQVQ--------DYVNKTNSHLPGKQVEISLVNGRKAKAPSGLDQ-S---RI-PFSERKLKFSNRFLPVAHSHLK |
7 | 2tmaA | 0.10 | 0.10 | 3.64 | 1.06 | Neff-PPAS | | MDAIKK----KMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQELELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSKEAETRAEFAERSVTKLEKSIDDLEDELYAQK |
8 | 1vt4I3 | 0.11 | 0.10 | 3.69 | 0.81 | HHsearch | | HRSIVDYNKDSDDLIPPYLDQYFYSIGHHLKHPERMTLFRLDFRFLEQKIRHDSTAWNASGSILN--TLQYKNDPKYERLVNAILDFLNLICSKYTDLLRIALMAE----DEAIFEEAHKQV----QRGGGGGGGGGGGGGGGGGGG---GGGGG-GGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGG- |
9 | 6fmlG | 0.08 | 0.08 | 3.25 | 0.60 | SP3 | | EGTNVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGNLVAGFRSKYLNHMPENIRSSLEGIENFTWLRFVDTSLQEAYRAVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTPPRALLPAPDHDKQRFTNITVPSMARFVTDSGKLAKLDELLRELKEGGHR |
10 | 3tnfB | 0.08 | 0.08 | 3.12 | 0.84 | PROSPECTOR2 | | LDEYEQAIKRENIKKGEELEKKLDKLERQ-------GKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNIGKDQQLFNLGGKFYPIHKEKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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