Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | HEGVVPVRAFPISAPASGLSLVSADGHELAWLDDLAQLPPAQRQLVEAELASREFMPEIRRIVSVSTFATPSSWQVETDRGNATFVLRGEEDIRRLAGHTLLITDMHGIFFLIRDALALDRHSRKLLDRF |
1 | 4o6mA1 | 0.22 | 0.16 | 5.09 | 0.88 | SPARKS-K | | --------------------------MRLAYVKNHEKLLGTLRERIEKTLQRAGF--DVRFFDELSLEEAEDYLIIL----EPVLILERD---LLLEGRKILVSDTVGYFFGLESYEKLSKTAEKLLLSS |
2 | 4n7vA | 0.13 | 0.11 | 3.71 | 0.56 | FFAS-3D | | ------------------VLQISSDGNTITIYYSFDNLPEKYWRKYQYASRVRSKSPKITY------FTRYAKCILMENSPGADFEVWFYDGVKHKTEDFIQVIEKTGKSYTLKSVNSLKEEIKMYMD-- |
3 | 4mhcA | 0.08 | 0.07 | 2.69 | 0.32 | HHpred | | ---KSDMGIFLELNY-CWITSWNNNSSEYHCIDEIEHT------ILKVKPSPNTFVSSVENLLIVATLFDIYILTISFNDRNTGLKVNVVSNIISYRTGQIFFTGADVNVWELQ-YNK------------ |
4 | 3d2lC | 0.10 | 0.10 | 3.65 | 0.62 | MUSTER | | NRHVDFWVQLELPEPVDAITILCD----LNYLQTEADV-KQTFDSAARLLTDGKLLFDVHS-PYKETLFNGKTYATHAEQSSYIWFADGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITW |
5 | 4fr9A | 0.10 | 0.07 | 2.55 | 0.73 | CNFpred | | --VYYVADCQAD--GREMEVWFDANANWLMTETELNNLPPAVLTAFMESS---YNNWVVDDVVILEY-EPSTEFVVTVEGMMVDLYFSEGGGLLHEM--------------------------------- |
6 | 2mmpA | 0.07 | 0.03 | 1.28 | 0.41 | HHsearch-2 | | YVKVRILKSRDDNSVEKYVLTSHVNRPKNAIVIKMDNLPIEVKDKLTRFFLLEHHHHHH----------------------------------------------------------------------- |
7 | 2xb3A | 0.12 | 0.12 | 4.05 | 0.75 | Neff-PPAS | | -EDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLP-------AQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTI |
8 | 3i0oA1 | 0.11 | 0.06 | 2.25 | 0.30 | HHsearch | | -----------------------------------QPIQ---AQQLIELLKVHYGI-DIHTAQFIQGGADAFAYQADSESK--SYFIKLKGYHRLLHDIIFPIHTLEHFKIIAYPFI------------- |
9 | 1lpfA3 | 0.15 | 0.11 | 3.62 | 0.93 | SP3 | | LSDDIIVGALEFQAVPKKLGVIGRLGAEVTVLEALPAADEQIAKEALKVLTKQGL--NIRRVTASEVKKKQVTVTFTDANGEQKETFD-----------KLIVA-V------------------------ |
10 | 2lnjA | 0.09 | 0.08 | 2.98 | 0.49 | PROSPECTOR2 | | KDGYEIGVDVKGASPGVDVVFRIERDENLSVIKTLTDATDVGYRFMKTVNDASQGDRQAELINAEARDEDGQEYRVLVGDNVERHDL-------------ASVTTNRGKLITFDRWDTVKSLFDTVASSF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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