Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | KDLARAVAARLIDYAIPRSEIMEAQEKDQKSNTTVNTVELKMKAKQLFTSLKKSGEGGEMLLYMLVQAFLGLPQLLCKMPLKTSSEMHYHGADGIHIGYDRNTKKLALYWGESKLYKSFDSALKNCLDSLKPFLFDDGGTQASQNRDLQLITDNLDLCNEELEDAILDFLNPNSPSFKKMQYRGVCLIGFDNGAYPLVPNSKDEDSVLNEIKDELGRWEKKLEKQIKNRTPLDSFILEVFLVPF |
1 | 2pffB | 0.15 | 0.14 | 4.83 | 1.11 | HHsearch-2 | | DDYFEELRDLYAKLLFTPGELRSYLKGATGTDSESFFVSVRKAITVLFEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ-VEISLVNGAKNLVVGPPQSLYGLNLTLRKAKAPSGLDQSFSERKLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG-SISERIVDCI----IRLPVKWETTT--Q-FKATHIL--DFGPG |
2 | 2pffB | 0.15 | 0.15 | 4.94 | 1.26 | HHsearch | | CPLIGQHYVVTAKLLFTPGELRSYLKGATGTDSESFFVSVRKAITVLFFAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ-VEISLVNGAKNLVVGPPQSLYGLNLTLRKAKAPSGLDQSFSERFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG-----SISERIVDCIIRLPVKWETTTQ---FKATHILDFIVAG- |
3 | 5sujA1 | 0.11 | 0.09 | 3.43 | 0.70 | SPARKS-K | | GVPAEVLGQQAERSIINKQQIAKEVSKVCHTEPTQSCGQASNDVCELLLKYEALSADGD----NLKNVLENTAPLLIRFEIDDPDFWIGSHSFTIYIPQTLGESPRQFYPYQAYSH-TLQDWFVDKDEYLSR------IGIDKYIEKLAVLGKTTNT--KERSDIYAEFFSKRGREEKRQPLRVKFKITINPELFIDTHPGENPSDKVENYRNRAKLATEHLESLLDI---------------- |
4 | 4iggA1 | 0.11 | 0.08 | 2.96 | 0.77 | FFAS-3D | | QFLKEELVAAVEDVRKQGDLMKAAAGEFADDPCSSVKRGMVRAARALLSAVTRLLILADMAVYKLLVQLKVVEDGILKLRNAGNEQD------------------------LGIQYKALKPEVDKLNIMAAKRQQE--LKDVGHRDQMAAARGILQKNVPILYTASQACL--------------------------QHPDVAAYKANRDLIYKQLQQAVTGISNAAQATASDDA---------- |
5 | 3nl2A | 0.16 | 0.11 | 3.53 | 0.34 | HHpred | | -----------------------------------EGKTLYGQVEAGLQNREKDADTKFFIIKELCHA-HNVPLIINRIDVAM-----AIGADGIHVGQDDMPDMVVDYIGVGTLFPTMGAGAIRVLDALERNNAHW--CRGLPDNIERVLQRSLDSLDAKSTKILRGLIDKTDYKFVNI-G----L--STKNSLTTT------DEIQSIISNTLK---------------------------- |
6 | 5cwmA | 0.12 | 0.11 | 3.89 | 0.79 | MUSTER | | EDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQAEKEGD--PEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAGDPEVALRAVELVVRVAELLLRIAKESG-SEEALERALRVAEEA-----ARLAKRVLELAEQGDPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEARELQERVKELRER---------------- |
7 | 4jn4A | 0.10 | 0.09 | 3.34 | 0.71 | CNFpred | | PQISAEVLKKMKKTAEDGEPVTEAVITV-----NDAQRQATKDAGRIA-GLEVKRIINEPTAAALAYGLDTGNRTIAVYDLGG----GAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLNDPLAMQRLK--------EAAEKAKIELS----SAQQTDVNLPYITADAT-GPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSSDIDDVILVGGQ |
8 | 2pffB | 0.10 | 0.09 | 3.46 | 0.87 | HHsearch-2 | | AELVGKFLGYVSSLVEPSKVG-QFDQVLNFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDRSYLKGATGHSQGLVTAVAIAETD---S---W--ESFF-VSVRKAITVLFFIGVRCYEAYPNTSPPSILEDSLENNEGSISQEQVQDYVNKSHLPAGKQ---VEIS---LVNGAKNLVVSGPP---QSLYG--LNLTLRKAKAPSGLDQSRIPSERKLKFSNRFLPV |
9 | 5cwmA | 0.10 | 0.09 | 3.45 | 0.89 | Neff-PPAS | | EDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQAEKEGEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEA-ARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGS-----EEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEARELQERVKELRER---------------- |
10 | 3f6hB | 0.09 | 0.05 | 1.70 | 0.34 | HHsearch | | ------KVLTIKSCNIHSGI----GIR------PHAQIELEYQG-KIHKEISEGDGGYDAFMNA-LTKITNRLG-ISIPKLIDYEVRIPPGTDATRITWNKS-LEDQTFKTMG-VHPDQTVAVHATEKMLNQILQPW-----QI---------------------------------------------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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