Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | EFDLYKMLIDITKQKRIFDRIFEMEERQGKDQLFRAMTTFAKPEVFLEKIKEKITMDDYNVVFLTGIGKVYPFVRSHNILNNLQEVLDNVPVIMFFPGKYDGQSLQLFGKFKDDNYYRAFRL |
1 | 5m1hA2 | 0.11 | 0.08 | 2.95 | 0.62 | SPARKS-K | | MHQLGNVIKGIVDQEGVATAYTLGMMLSNYQLVSGIIRGYLPGQAVVTALQQRLDQEIDD------------QTRAETFIQHLNAVYEILGL------NARGQSIRLE-------------- |
2 | 3s5uA | 0.09 | 0.08 | 3.08 | 0.66 | FFAS-3D | | --LIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYEVQELFKAEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLN--NVDVLFLEQRVVQNRFQYILDE------------ |
3 | 2c4mC2 | 0.13 | 0.13 | 4.53 | 0.33 | HHpred | | -PGLSDLLTRLSGSDDWLDELKKLRSYADDKSVLEELRAIKNKQDFAEWILERQGEIDPESIFDVQIKRLHEYKRQLMALYVLDLYFRIPARTVIFGAKAAPPKVVFVENYNVSHILPASDV |
4 | 3v67A | 0.11 | 0.10 | 3.53 | 0.64 | MUSTER | | -------------PRKADEHYQRIIET--RDAIQNKYSKETDLGRILFRVEGNRAGKHDPRVFFSDYGNVLRSNFQLRAMQNFVTSIEDYPKQRLYGRVLADSELLMYVGFKWNEPPPLLLR |
5 | 2qenA | 0.05 | 0.04 | 1.91 | 0.57 | CNFpred | | HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGELLALFAYAYDSLPNLKIILTGSE------------------------ |
6 | 2c4mC2 | 0.13 | 0.13 | 4.54 | 0.39 | HHsearch-2 | | NPGLSDLLTRLSGSDDWLDELKKLRSYADDKSVLEELRAIKAKQDFAEWILERQGEIDPESIFDVQIKRLHEYKRQLMALYVLDLYFRIPARTVIFGAKAAPPKVVFVENYNVEHILPASDV |
7 | 1zd8A1 | 0.12 | 0.11 | 3.75 | 0.60 | Neff-PPAS | | HLSSGDLLRDNMLRGTEIGVLAKAFIDQG---------KLIPDDVMTRLALHELKNLTQYSWLLDG------FPRTLPQAEALDRAY-QIDTVINLNKAYEDQTKPVLEYYQKKGVLETFSG |
8 | 4mm1A1 | 0.24 | 0.17 | 5.36 | 0.55 | HHsearch | | ------------FKMKVEDYFHDIL-RERK-----IHLTLIDPEEEAVEIARAAIRGGTDGIMLGGSTTDSSE--LDNTARALRENI-DVPIIL-FPGNTTGVSR------YADA------- |
9 | 2qenA | 0.05 | 0.05 | 2.31 | 0.59 | SP3 | | HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRGGKELLALFAYAYDSLPNLKIILTG--SEVGLLHDFLKITDYESPLYGRIA |
10 | 3h5lA2 | 0.11 | 0.11 | 3.84 | 0.51 | PROSPECTOR2 | | PETFLKFLKDIEDNGEIANAIRDGAGEYGYGPTLAKLRATHFYPQDQALFMNQFMTDPTNSLVYLQYGASLA-----AFRDIAGDNSVVLHIFSQIFDKAEDGVLIAPAPYKKAGFKMPPWM |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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