>PF08602 (395 residues) MALYTPPGKSPSRPQAKENENDKKDDPKDDISKFYVRPSLGLRLWGPLVPASDNKVGLWS LIGIQSAVGIFCMYRIRRLRGSLNTVRKNIADIPSLNRFSTTQGELVMPPPSLTGSAPTT FTAGHGVQKASYGGTAFGGASSFFKSSSKENGKSGFKFASFMTFKQVIYLLTGTLLLSQS LLEACRLTILKYDPWAEEARSVRDKKFFNDIIKFYHEGIDPTKVRVKDASSGNVMPTNIP EVKQSVALVRAQAEAENPIIKWYGPLEYKPMSFSEYLDKLEYHLEMIVFLQEDKKAKETA MEIMHKITYSATEVEELGKKNVENRKKAYELVTNAHKGSIPLSDKVQTYPMRGVLMETDN QSPEDFDLEEMWNLYDPWMNLALDTSLSIKFLPTV |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MALYTPPGKSPSRPQAKENENDKKDDPKDDISKFYVRPSLGLRLWGPLVPASDNKVGLWSLIGIQSAVGIFCMYRIRRLRGSLNTVRKNIADIPSLNRFSTTQGELVMPPPSLTGSAPTTFTAGHGVQKASYGGTAFGGASSFFKSSSKENGKSGFKFASFMTFKQVIYLLTGTLLLSQSLLEACRLTILKYDPWAEEARSVRDKKFFNDIIKFYHEGIDPTKVRVKDASSGNVMPTNIPEVKQSVALVRAQAEAENPIIKWYGPLEYKPMSFSEYLDKLEYHLEMIVFLQEDKKAKETAMEIMHKITYSATEVEELGKKNVENRKKAYELVTNAHKGSIPLSDKVQTYPMRGVLMETDNQSPEDFDLEEMWNLYDPWMNLALDTSLSIKFLPTV | |||||||||||||||||||
1 | 6gy6A | 0.08 | 0.07 | 2.75 | 1.09 | Neff-PPAS | HSLELPFTLEGVKEYIGYNDIDIDGLKPAKMATLFKEIHDHALSWSGVESKVQQQSIDLENAGKQITLTGDEIISVIDQMPIIERVKNKLGDLTDKQ----------LAEITYTNDDKEIAVE---------------------------------LGNILESMKKDIKRQQENTQKVKTAVSDFKLKLIG-GELSDGTIAQGLQPQISSKKKLMDDN--------NLSTTIKDLQSKIDEKNKEIDQFQKDYNKYVGLAFSGMTGGIFGDKAEKARKQKNKLIDEVKDLQSQVKDKSALQTSVQNLSLSFAGIHTSMVDAEEALNHLDFMWNTMLTQITTSRDKFDD-------------INDALKLTSFVIAFKPWRDVQGSAAQLIQTFDEA | |||||||||||||
2 | 4lypA | 0.09 | 0.07 | 2.53 | 1.04 | PROSPECTOR2 | SEVKIASDGKGYWQGMNLGADDCSGGDRKRMELSEGPDDQPYRMRPSMMPQPGNEGVFVGLDYLWQWSGGFGQYVAWIT----------------------------------------------------------------GNQTIPYPVGDVTYDEFTQFAARFYNDSEIAPKANKLFKDHIYTVQEAPASWFEESTFIKKG--------------APKHLVSAGLESKLD-----------EYDFDRAHDHKNIVENWGIYDPADPDGLPHANEYMHDFLESRSKWAAQLNDAWRNPEDETYKYLPSTPTSHKDEYYQKAFNQIVSLASNRSEGRSTYPPNPYGMVWLGDPPHEPHGWSNDTTVQIIKDYNANLLKVQKELS--------K | |||||||||||||
3 | 5mqfM | 0.09 | 0.08 | 3.14 | 0.87 | SPARKS-K | VVNDERFVSKAGKSNYQLISQNPDKVQSLNVDAIIRGGLTRFT--------DQLGKLWCSLADYYIRSGHFARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMISELGREEEDDVDLELFEQLISRRPLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVGKPHTLWVAFAKFYEDNARVILEKATKVNFKQWCQCGELELRHENYDEALRLLRKATALPARR-AEYFDGSEPVQNRVYKSLKVWSMLADLEESLG--------TFQ-STKAVYDRILDINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARARDLFEQALDGC-PPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEQYDMFNIYIKRAAEIYGV | |||||||||||||
4 | 1wp1A | 0.12 | 0.08 | 2.98 | 0.86 | FFAS-3D | ---YQRPEAPVAAAYPQGQAYGQNTGAAAVPAA--------DIGW--REFFRD--PQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTLGTTAWELDLFG------------------------RLRSLRDQALEQYLATEQAQRSAQTTLV-----ASVATAYLTLK----------------------------------ADQAQLQLTK------------------------DTLGTYQKSFDLTQRSYDALDLRQAQTAVEGA----RATLAQYTRLVAQDQNALVLLLGSGIPANLPQGLGLDQTLLTEVPALPSDLLQRRPDILEAEHQLMAAASIGAARA---AFFPSI | |||||||||||||
5 | 4gzkA | 0.17 | 0.12 | 3.93 | 0.45 | HHpred | --IVTDPRNSESVGDHDPDGPLVGYDPRNPTTLFANARQTGTQ---LVAPAREILTGIYSFEPT-------VLAFQREFVKRNA-------VAQ----PDLNSDG--FSLNGLHTT----FDS----IRSVSGYPQWPVSALPK----SN--------VG---LLR-------------------DLK-LQ-ER-----MTARQVVIAREIWKRVWGHMKPTAIKIKMSTSGPPRNVNDAEMKLQYA--LALFSGN---------------RYNGYLDAFKSG-DLSRFYRDYRWQVDNADIERE-LAPSKTINVALQPFATGCMNAMFELYRATWHP---DEDKIAGFEGKHAF-FGDVSFSEKIDL--SLVGKEFISPE-------------- | |||||||||||||
6 | 5xsvA2 | 0.12 | 0.11 | 3.73 | 0.66 | MUSTER | SIIYLPASWKPGNFTLSADPKSDPHVKPHQNGFIMYNPPIGLPLNL-WVP---NKYFAMGLALAYEWFKVPNFLMALAAKENWGTAVTKDPAFKGYK-VIIDEEEYYWPVQIDHPDGIFQVESGNFNQIKAYYPDIFPDTADHDDYMKVSLDPNDTAWITSPIVAAVSLTMERELLYAAVGDKYNEFLRLAKDP---WAETEIIDFGYNRVGAIEALKIFSDNWAINAEVLWKEFNMEGGHVPTVINITATMDMETERI------YDA-NLT----WDDIEYFFTVVRQKRPGAISDEEWNAMMRDVK---RAYDLLSQHWGGYRYDFLTILR-VAMKHWPEPHIPR---------------PTGDDWYYHARNYNP------------------ | |||||||||||||
7 | 5h7cA | 0.14 | 0.08 | 2.78 | 0.69 | CNFpred | -------------------------------------------------------EIVKELAELAVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQS----------------------------------------------------------TDSELVNEIVKQLAEVAKEADKELVIYIVKIL-----AELAKQSTDSELVNEIVKQLEEV---------------AKEATDKELVEHIEKILEELEQQ---SAFYEILSLPNLNRNAFIQSLKDDPSQSANLLAEAKSLNVNQAVKQLAEKAKEAT--DKEEVIEIVKELAELAKQSTDSELVNEIVK--------QLAEV--AKEATDKELVIYIVKILAELAKQ----------- | |||||||||||||
8 | 1vt4I3 | 0.16 | 0.05 | 1.76 | 0.95 | HHsearch-2 | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYALHRSIVDHYN-IPKTFDSDDLIPPYLQYFYSHIGHHLKNIEHPERMTLFRMVFRFLEQKIRNTLQQLKFYKPYICDNDPKYERLVNAILDF-LPKI-------------EENLICSKYTDLLRIALMAE-DEAIFEEA------HKQV | |||||||||||||
9 | 6ek7A | 0.08 | 0.07 | 2.61 | 1.08 | Neff-PPAS | KGLSLPTRQDEVEAYLGYKKIDVAGLEPKDIKLLFDEIHNHALNWNDVEQAVLQQSLDLDIAAKNIISTGNEIINLINQMPITLRVKTLLGDIT---------------------------------------------DKQLENITSADHEVASALKDILDDMKGDINRHQTTTENVRKKVSDYRITLTGGELSSGDKVNGLEPQVKTKYDLMEKSN---------MRKSIKELDEKIKEKRQRIEQLKKDYDKFVGLSFTGATGGIFGAKAENARKEKNALISEVAELESKVSSQRALQTALEALSLSFSDIGIRMVDAESALNHLDFMWLSVLNQITESQIQFAM-------------INNALRLTSFVNKFQPWQSVGDSARQLVDIFDEA | |||||||||||||
10 | 1e6dM | 0.16 | 0.07 | 2.44 | 0.61 | HHsearch | LGMT-EDVNLANRSGVGTAQWYQAGWNPAFFSLEPPAPEYGLSFAAPL-----KEGGLFLIASFFMFVAVWSWRTYLRAQALRPILMGSWSEAVPYGNFSLVHGNLRYNP--------------------------------F-------------------HGLSIAFLYGSALLFAGATILAV------SRFGGERTAAERAALFWRWTMGFN---ATMEG------------------IHR-WAIWMAVLVVDNWYVWGQG----------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |