>PF08553 (354 residues) VNSQLAVGYKHDRSFVVRGSKIGVFKHTPNNNLEFSTNISKVETPEGKLFSPKKVMLHAE DTNMILQNEANPNSLYRMDLEYGKIVDEWKVHDDIQVNTFAPENKFAQMTGEQTFLGLSR NALYRIDPRLAGNKLVDSELKQYVSKNDFSAAATTEKGYIAVASNKGDIRMFDRLGINAK THIPALGDPIIGLDVSADGRWVLATCRTYLLLIDAMQKEGKNEGKLGFEKSFGKDSKPQP RRLGLTPSHVAQFQHETGVPLSFTPARFNTGEGVNETSIITATGPFIVTWNLKKVLRGNK DPYTIKRYAEEVKADNFKYGSDKNVIVALPNEVNMVAKQSFKKPTRESIATPVR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VNSQLAVGYKHDRSFVVRGSKIGVFKHTPNNNLEFSTNISKVETPEGKLFSPKKVMLHAEDTNMILQNEANPNSLYRMDLEYGKIVDEWKVHDDIQVNTFAPENKFAQMTGEQTFLGLSRNALYRIDPRLAGNKLVDSELKQYVSKNDFSAAATTEKGYIAVASNKGDIRMFDRLGINAKTHIPALGDPIIGLDVSADGRWVLATCRTYLLLIDAMQKEGKNEGKLGFEKSFGKDSKPQPRRLGLTPSHVAQFQHETGVPLSFTPARFNTGEGVNETSIITATGPFIVTWNLKKVLRGNKDPYTIKRYAEEVKADNFKYGSDKNVIVALPNEVNMVAKQSFKKPTRESIATPVR | |||||||||||||||||||
1 | 6iamA | 0.16 | 0.12 | 4.14 | 2.01 | SPARKS-K | TKAVSSVKFSPNGEWLASSSLIKIWGAYDGKFKTISGHKLGI-----------SDVAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNVFCCNFNPQSN-------LIVSGSFDESVRIWDVKT-GKCLKTLPAH----SDPVSAVHFNRDGLIVSSSYDGLCRIWDTASGQCLKTLIDDNPPVSFVKFSPNGKYILAATDNTLKLWDY----------------------SKGKCLKTYTGHKN---EKYCIFANFSVTG-------GKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTACHP--TENIIASAALTIKLWKSDC-------------- | |||||||||||||
2 | 6e29D | 0.11 | 0.09 | 3.19 | 2.16 | FFAS-3D | -GHSTCVRFNRKGDFLASGRVDGTVV------IWDLETMGVARKLRGHSKNITSLS-WSRCGRYLL-SACQGWKVILWDLQDGKRYREVRFRAPVYGAELHPW------NHHQFAAALFEDQPMLVDITEPVEVRYVLPSVEDAKHMTTAIVYTASGDHLLAGTTKGRLNIIDARTREIIYSEKIASGIITTLRLTESGRELLVNADRIIRTFIVPNLSAADLDPIQLPL--------------------EHKFQDVVNRLSWNHVAFS---ATGEYVAASTYNNELYIWER----GHGSLVRMLEGPKEEQGVIEWHP-HRALLAACGLETGRI------------------- | |||||||||||||
3 | 3dm0A | 0.15 | 0.12 | 3.98 | 4.43 | HHpred | TDMVTAIATPIDNDIIVSASSIILWKLTKGVAQRLTGHSHFVED-----------VVLSSDGQFAL-SGSWDGELRLWDLAAGVSTRRFVGHTKVLSVAFSLDN-------RQIVSASRDRTIKLWNTL-GE-CKYTISEGGEGHRDWVSCVRFSPNTLIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKGVVLLWDLAEGK----------------------KLYSLEAN-SVI-----HALCF-----SP----NRYWLCAATEHGIKIWDLESKS----IVEDLKVDLKKCTSLNWSA--DGSTLFSGYTDIRVWGI---------------- | |||||||||||||
4 | 5mzhA | 0.12 | 0.11 | 3.78 | 1.77 | MUSTER | ILPLTNCAFNKSGDRFITGSY--------DRTCKVWNTFTGVFTLEGHKNVVYAIAFNNPYGD-KIVTGSFDKTCKLWDAYTGQLYYTLKGHQTIVCLSFNPQST-------IIATGSMDNTAKLWDVETGQERATLAGH-----RAEIVSLGFNTGGLIVTGSFDHDSRLWDVRTGQCVHVLSGHRGEVSSTQFNYAGTLVVSGSDCTSRLWDVRSGRCLSVKQGHTDEVLDVAFDAAGTKMVSADGSARLYHTLTGVCQHTLGEISKVAFNPQGTRLITASDKTCRLWDCDTG----ECLQVLEGHTDEIFSCAFNY--EGDFIITGSKDCRIWKALT-------------- | |||||||||||||
5 | 5l8eA | 0.11 | 0.09 | 3.23 | 3.63 | CNFpred | RNGVNALQLDPALNRLFTAGIIRIWSVNQHKQDPYIASMEHHTD-------WVNDIVLCCN-GKTLISASSDTTVKVWNAHKGFCMSTLRTHKYVKALAYAKD-------KELVASAGLDRQIFLWDVNT-TVTTSSLSGN----KDSIYSLAMNQLGIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSGTIRLWSLGQ----------------------QRCIATYRVHDEGV-----WALQVNDA--------FTHVYSGGRDRKIYCTDLRNP----DIRVLICEEKAPVLKMELDRSDPPPAIWVATTKSTVNKWT--------------- | |||||||||||||
6 | 3dm0A | 0.16 | 0.12 | 4.05 | 0.42 | HHsearch-2 | TDMVTAIATPIDNDIIVSASSIILWKLTKGVAQRLTGHSHFVED-----------VVLSSDGQFAL-SGSWDGELRLWDLAAGVSTRRFVGHTKVLSVAFSLDN-------RQIVSASRDRTIKLWNTL-GE-CKYTISEGGEGHRDWVSCVRFSPNTTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKGVVLLWDLAEGK----------------------KLYSLEAN-SVI-----HALCFSP---------NRYWLCAATEHGIKIWDLESKS----IVEDLKVDLKKCTSLNWSA--DGSTLFSGYTDIRVWGI---------------- | |||||||||||||
7 | 5nnzB | 0.11 | 0.09 | 3.40 | 2.10 | Neff-PPAS | ILPLTNVALNKSGSCFITGSY--------DRTCKLWDTGEELNTLEGHRNVVYAIAFNNPYGD-KIATGSFDKTCKLWSVETGKCYHTFRGHTAIVCLSFNPQ-------STLVATGSMDTTAKLWDIQNGEEVYTLRGH-----SAEIISLSFNTSGRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATADGTARIFSAATRKCIAKLEGHEGESFNPQGNHLLTGSSDTARIWDA----QTGQCLQVLEGHTDEIFSCAFN--YKGNIVITGSKDNTCRIWR--------------- | |||||||||||||
8 | 3iytA3 | 0.13 | 0.11 | 3.70 | 0.70 | HHsearch | KKAVYHACFSEDGQRIASCGTLQVFKAETGEKLLIKAHEDEVL-----------CCAFSTDDRFIA-TCSVDKKVKIWNSMTGELVHTYDEHSEVNCCHFTNSH-------LLLATGSSDCFLKLWDLNQKE-CRNTMFGH----TNSVNHCRFSPDDLLASCSADGTLKLWDATSANERKSINVKQFF---LNLEDPQERIMVAAKNKIFLFDIHTSG----------------------LLGEHTGHHSTI-----QYCDFSP---------QNHLAVVLSQYCVELWNTDSRS----KVADCRGHLSWVHGVMFSP--DGSSFLTSSDDIRLWETKKVCKNSAVMNGTNL- | |||||||||||||
9 | 4lg9A | 0.08 | 0.07 | 2.75 | 2.04 | PROSPECTOR2 | ESEVFICAWNPVSDLLASGSTARIWNLSENTQLVLR--------HCVPSNKDVTSLDWNSEGT-LLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKG-------NFILSAGVDKTTIIWDAHTGEAKQQF-----PFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDMTLKIWSMKQDNCV----------------------HDLQAHNKEI-----YTIKWSPTGPGTNNPNANLMLASSFDSTVRLWDVDRGI----CIHTMTKHQEPVYSVAFSP--DGRYLASGSFDKCVHNTQTGALVHSYRGTGGLR | |||||||||||||
10 | 5a1uD | 0.13 | 0.10 | 3.42 | 4.15 | SAM | -DRVKSVDLHPTEPWMLASLSVCVWNHETQTLVKFEVCDLPVRA-----------AKFVARKNWVV-TGADDMQIRVFNYNTLERVHMFEAHSDIRCIAVHPTQ-------PFILTSSDDMLIKLWDWDKKS-CSQVFEGH----THYVMQIVINPDNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDYLISGADRLVKIWDYQNKT----------------------CVQTLEGHAQNV-----SCASFHP---------ELPIIITSEDGTVRIWHSSTYR----LESTLNYGMERVWCVASLR--GSNNVALGYDE---------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |